C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: YY1 transcription factor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000262238 YY1-001 ENSG00000100811 9606 + 14:100238985-100282792 protein_coding

Homo sapiens EnsemblGRCh38

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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000262238
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000262238 12.099±0.00 14.873±0.00 3.316±0.00 9.242±4.26 9.954±3.80 10.465±6.32 4.940±3.55 11.688±7.49 6.173±0.79 11.681±6.02 6.176±4.40 10.154±3.80 9.524±0.95 10.843±2.63

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00032R CIL_00032R_0001 CGP 14:100143957-100282792
CIL_0004AD CIL_0004AD_0001 CGP 14:100238298-100306547

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0000400 IDA four-way junction DNA binding
GO:0000724 IMP double-strand break repair via homologous recombination
GO:0001078 ISS RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription
GO:0003677 IDA DNA binding
GO:0003700 TAS sequence-specific DNA binding transcription factor activity
GO:0003713 TAS transcription coactivator activity
GO:0003714 TAS transcription corepressor activity
GO:0003723 IDA RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005667 IEA transcription factor complex
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006357 TAS regulation of transcription from RNA polymerase II promoter
GO:0006403 IEA RNA localization
GO:0006974 IMP cellular response to DNA damage stimulus
GO:0007283 IEA spermatogenesis
GO:0008270 TAS zinc ion binding
GO:0009952 IEA anterior/posterior pattern specification
GO:0010225 IMP response to UV-C
GO:0010628 IEA positive regulation of gene expression
GO:0030154 IEA cell differentiation
GO:0031011 IDA Ino80 complex
GO:0031519 IEA PcG protein complex
GO:0034644 IMP cellular response to UV
GO:0034696 IEA response to prostaglandin F
GO:0044212 IDA transcription regulatory region DNA binding
GO:0046872 IEA metal ion binding
GO:0048593 IEA camera-type eye morphogenesis
GO:0051276 IEA chromosome organization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000021692 Yy1-001 protein_coding Mus_musculus 0 3725
ENSMUST00000126912 Yy1-002 retained_intron Mus_musculus 0 758
ENSMUST00000179062 Mbtps2-201 protein_coding Mus_musculus 0 496
ENSMUST00000112522 Mbtps2-003 protein_coding Mus_musculus 0 496
ENSMUST00000065806 Yy2-001 protein_coding Mus_musculus 0 496
ENSDART00000038745 yy1b-001 protein_coding Danio_rerio 0 448
ENSDART00000148632 yy1b-002 protein_coding Danio_rerio 7e-32 145

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