C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: intraflagellar transport 52
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000101052 IFT52 9606 + 20:43590931-43647296 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000373030 IFT52-001 43590931-43647296 protein_coding
  ENST00000373039 IFT52-002 43590990-43647222 protein_coding
  ENST00000460014 IFT52-005 43613966-43621058 processed_transcript
  ENST00000461012 IFT52-006 43637147-43647227 processed_transcript
  ENST00000467024 IFT52-004 43613850-43624122 processed_transcript
  ENST00000468420 IFT52-003 43613899-43637204 processed_transcript
  ENST00000471199 IFT52-007 43642158-43647217 processed_transcript
  ENST00000476986 IFT52-008 43603874-43605216 processed_transcript
  ENST00000486243 IFT52-009 43594722-43605073 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000373030ENST00000373039ENST00000460014ENST00000467024ENST00000468420ENST00000471199ENST00000476986
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000373030 4.137±0.00 3.396±0.00 N/A 1.491±0.44 N/A 0.431±0.00 1.086±0.00 1.818±0.00 0.808±0.00 N/A N/A 5.207±1.66 1.719±0.08 4.022±1.14
ENST00000373039 8.454±0.00 8.220±0.00 N/A 3.347±2.83 10.116±0.00 2.716±2.38 0.657±0.59 3.860±3.21 1.099±0.29 2.935±2.32 1.462±0.00 10.802±8.45 8.014±2.65 14.760±7.03
ENST00000460014 N/A N/A 2.783±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000467024 N/A N/A N/A 1.620±0.00 N/A N/A N/A N/A 0.935±0.00 N/A N/A 6.365±0.00 N/A N/A
ENST00000468420 N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.228±0.00 N/A N/A N/A 9.110±0.00
ENST00000471199 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.058±0.00 N/A N/A N/A
ENST00000476986 N/A N/A N/A N/A N/A 3.276±0.00 N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00044M CIL_00044M_0001 CGP 20:43558968-43647296
CIL_00044J CIL_00044J_0001 CGP 20:43590931-43716496

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001841 IEA neural tube formation
GO:0001947 IEA heart looping
GO:0005515 IEA protein binding
GO:0005813 IEA centrosome
GO:0005814 IBA centriole
GO:0005929 IBA cilium
GO:0007224 IEA smoothened signaling pathway
GO:0007368 IEA determination of left/right symmetry
GO:0008022 ISS protein C-terminus binding
GO:0009953 IEA dorsal/ventral pattern formation
GO:0030992 ISS intraciliary transport particle B
GO:0031514 ISS motile cilium
GO:0032391 IEA photoreceptor connecting cilium
GO:0042073 IBA intraciliary transport
GO:0042733 IEA embryonic digit morphogenesis
GO:0044292 IEA dendrite terminus
GO:0050680 IEA negative regulation of epithelial cell proliferation
GO:0060271 IBA cilium morphogenesis
GO:0070613 IEA regulation of protein processing
GO:0097542 IEA ciliary tip
GO:0097546 IEA ciliary base

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000045025 ift52 intraflagellar transport protein 52 protein_coding Danio_rerio
ENSMUSG00000017858 Ift52 intraflagellar transport 52 protein_coding Mus_musculus

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