C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: intraflagellar transport 52
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000373030 IFT52-001 ENSG00000101052 9606 + 20:43590931-43647296 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainColonHeartKidneyLiverOvaryPlacentaTestisENST00000373030
Transcript ID Adipose Adrenal Brain Colon Heart Kidney Liver Ovary Placenta Testis
ENST00000373030 4.137±0.00 3.396±0.00 1.491±0.44 0.431±0.00 1.086±0.00 1.818±0.00 0.808±0.00 5.207±1.66 1.719±0.08 4.022±1.14

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00044M CIL_00044M_0001 CGP 20:43558968-43647296
CIL_00044J CIL_00044J_0001 CGP 20:43590931-43716496

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001841 IEA neural tube formation
GO:0001947 IEA heart looping
GO:0005515 IEA protein binding
GO:0005813 IEA centrosome
GO:0005814 IBA centriole
GO:0005929 IBA cilium
GO:0007224 IEA smoothened signaling pathway
GO:0007368 IEA determination of left/right symmetry
GO:0008022 ISS protein C-terminus binding
GO:0009953 IEA dorsal/ventral pattern formation
GO:0030992 ISS intraciliary transport particle B
GO:0031514 ISS motile cilium
GO:0032391 IEA photoreceptor connecting cilium
GO:0042073 IBA intraciliary transport
GO:0042733 IEA embryonic digit morphogenesis
GO:0044292 IEA dendrite terminus
GO:0050680 IEA negative regulation of epithelial cell proliferation
GO:0060271 IBA cilium morphogenesis
GO:0070613 IEA regulation of protein processing
GO:0097542 IEA ciliary tip
GO:0097546 IEA ciliary base

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000018002 Ift52-001 protein_coding Mus_musculus 0 1594
ENSMUST00000150396 Ift52-002 protein_coding Mus_musculus 0 904
ENSMUST00000152201 Ift52-003 processed_transcript Mus_musculus 0 534
ENSDART00000066191 ift52-001 protein_coding Danio_rerio 0 468
ENSMUST00000125144 Ift52-004 processed_transcript Mus_musculus 0 307

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