C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: intraflagellar transport 52
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000373039 IFT52-002 ENSG00000101052 9606 + 20:43590990-43647222 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000373039
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000373039 8.454±0.00 8.220±0.00 3.347±2.83 10.116±0.00 2.716±2.38 0.657±0.59 3.860±3.21 1.099±0.29 2.935±2.32 1.462±0.00 10.802±8.45 8.014±2.65 14.760±7.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00044M CIL_00044M_0001 CGP 20:43558968-43647296
CIL_00044J CIL_00044J_0001 CGP 20:43590931-43716496

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005814 IBA centriole
GO:0005929 IBA cilium
GO:0008022 ISS protein C-terminus binding
GO:0030992 ISS intraciliary transport particle B
GO:0031514 ISS motile cilium
GO:0042073 IBA intraciliary transport
GO:0060271 IBA cilium morphogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000018002 Ift52-001 protein_coding Mus_musculus 0 1591
ENSMUST00000150396 Ift52-002 protein_coding Mus_musculus 0 904
ENSMUST00000152201 Ift52-003 processed_transcript Mus_musculus 0 534
ENSDART00000066191 ift52-001 protein_coding Danio_rerio 0 468
ENSMUST00000125144 Ift52-004 processed_transcript Mus_musculus 0 302

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