C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: negative elongation factor complex member C/D
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000101158 NELFCD 9606 + 20:58981208-58995133 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000344018 NELFCD-201 58981276-58995096 protein_coding
  ENST00000460601 NELFCD-010 58981275-58995133 nonsense_mediated_decay
  ENST00000464363 NELFCD-006 58981275-58986761 retained_intron
  ENST00000471621 NELFCD-007 58981252-58987421 retained_intron
  ENST00000474543 NELFCD-002 58989019-58995133 retained_intron
  ENST00000477741 NELFCD-008 58987710-58995133 retained_intron
  ENST00000478389 NELFCD-011 58990095-58995133 retained_intron
  ENST00000479207 NELFCD-004 58991312-58995133 processed_transcript
  ENST00000482747 NELFCD-009 58981275-58990400 retained_intron
  ENST00000486263 NELFCD-005 58993923-58995133 retained_intron
  ENST00000490205 NELFCD-001 58991037-58991922 retained_intron
  ENST00000492016 NELFCD-012 58981252-58987969 retained_intron
  ENST00000497935 NELFCD-013 58990896-58993544 processed_transcript
  ENST00000602795 NELFCD-003 58981208-58995133 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000344018ENST00000460601ENST00000474543ENST00000477741ENST00000478389ENST00000479207ENST00000482747ENST00000497935ENST00000602795
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000344018 N/A N/A 0.977±0.00 6.707±0.00 N/A N/A N/A 6.638±2.42 2.996±0.00 8.416±0.00 3.547±0.00 35.979±0.00 12.733±0.00 23.964±0.00
ENST00000460601 N/A N/A N/A 1.541±0.00 N/A 1.770±0.00 0.552±0.00 N/A 1.204±0.00 N/A N/A N/A N/A N/A
ENST00000474543 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 11.950±0.00 N/A N/A
ENST00000477741 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.409±0.00 N/A N/A N/A
ENST00000478389 N/A 3.667±0.00 N/A N/A N/A 0.574±0.00 1.149±0.00 N/A N/A N/A 0.289±0.00 2.803±0.00 N/A N/A
ENST00000479207 N/A 9.856±0.00 N/A N/A N/A N/A N/A N/A 4.703±0.00 N/A N/A N/A N/A N/A
ENST00000482747 N/A N/A N/A N/A 3.431±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000497935 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.368±4.52 144.518±0.00 77.350±0.00 120.470±0.00
ENST00000602795 20.166±0.00 13.991±0.00 1.282±0.00 8.542±3.92 12.647±9.16 9.091±7.07 4.482±3.54 11.964±10.44 5.762±3.57 7.840±2.63 11.854±0.00 19.227±6.94 20.925±8.45 39.897±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002U2 CIL_0002U2_0001 CGP 20:58981208-59007247

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006368 TAS transcription elongation from RNA polymerase II promoter
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0032021 IDA NELF complex
GO:0045892 IEA negative regulation of transcription, DNA-templated
GO:0050434 TAS positive regulation of viral transcription

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000021097 nelfcd negative elongation factor complex member C/D protein_coding Danio_rerio
ENSMUSG00000016253 Nelfcd negative elongation factor complex member C/D, Th1l protein_coding Mus_musculus

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