C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: negative elongation factor complex member C/D
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000460601 NELFCD-010 ENSG00000101158 9606 + 20:58981275-58995133 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonHeartLiverENST00000460601
Transcript ID Brain Colon Heart Liver
ENST00000460601 1.541±0.00 1.770±0.00 0.552±0.00 1.204±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002U2 CIL_0002U2_0001 CGP 20:58981208-59007247

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006368 TAS transcription elongation from RNA polymerase II promoter
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0032021 IDA NELF complex
GO:0045892 IEA negative regulation of transcription, DNA-templated
GO:0050434 TAS positive regulation of viral transcription

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000109075 Nelfcd-001 protein_coding Mus_musculus 0 2032
ENSMUST00000016397 Nelfcd-002 protein_coding Mus_musculus 0 1447
ENSMUST00000129716 Nelfcd-003 processed_transcript Mus_musculus 0 547

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