C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: regulation of nuclear pre-mRNA domain containing 1B
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000101413 RPRD1B 9606 + 20:38033546-38127780 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000373433 RPRD1B-001 38033546-38092366 protein_coding
  ENST00000449186 RPRD1B-004 38049753-38089839 protein_coding
  ENST00000462548 RPRD1B-003 38033725-38091237 nonsense_mediated_decay
  ENST00000471511 RPRD1B-005 38083896-38090259 processed_transcript
  ENST00000484683 RPRD1B-006 38085376-38090008 processed_transcript
  ENST00000495457 RPRD1B-002 38033832-38059425 nonsense_mediated_decay
  ENST00000614670 RPRD1B-009 38066082-38127780 protein_coding
  ENST00000618318 RPRD1B-008 38065878-38125081 processed_transcript
  ENST00000622494 RPRD1B-007 38066181-38070617 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartLiverMuscleOvaryTestisENST00000373433ENST00000462548
Transcript ID Adipose Bladder Brain Breast Colon Heart Liver Muscle Ovary Testis
ENST00000373433 6.370±0.00 1.883±0.00 1.395±0.00 3.999±0.03 3.203±2.08 2.197±0.00 3.017±0.00 4.567±0.00 7.248±2.68 6.563±0.24
ENST00000462548 N/A N/A 1.555±0.00 N/A N/A N/A N/A 5.226±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004NX CIL_0004NX_0001 CGP 20:37983007-38127780
CIL_0004NY CIL_0004NY_0001 CGP 20:38033546-38166578

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000993 IDA RNA polymerase II core binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0008284 IDA positive regulation of cell proliferation
GO:0010564 IDA regulation of cell cycle process
GO:0016591 IDA DNA-directed RNA polymerase II, holoenzyme
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0070940 IMP dephosphorylation of RNA polymerase II C-terminal domain

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000038113 rprd1b regulation of nuclear pre-mRNA domain containing 1B protein_coding Danio_rerio
ENSMUSG00000027651 Rprd1b regulation of nuclear pre-mRNA domain containing 1B protein_coding Mus_musculus

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