C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: regulation of nuclear pre-mRNA domain containing 1B
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000027651 Rprd1b 10090 + 2:158028497-158132297 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000029180 Rprd1b-004 158028721-158078207 protein_coding
  ENSMUST00000103123 Rprd1b-001 158028497-158078207 protein_coding
  ENSMUST00000109518 Rprd1b-002 158028701-158078207 protein_coding
  ENSMUST00000109519 Rprd1b-005 158028508-158048710 retained_intron
  ENSMUST00000128206 Rprd1b-006 158043423-158075067 protein_coding
  ENSMUST00000135603 Rprd1b-007 158047959-158070510 protein_coding
  ENSMUST00000152452 Rprd1b-008 158028799-158132297 protein_coding
  ENSMUST00000156552 Rprd1b-003 158028692-158078207 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainColonLiverMuscleOvaryTestisENSMUST00000029180ENSMUST00000103123ENSMUST00000109518ENSMUST00000128206ENSMUST00000156552
Transcript ID Adrenal Brain Colon Liver Muscle Ovary Testis
ENSMUST00000029180 15.398±2.59 1.793±0.10 N/A 10.881±0.00 5.228±0.86 5.281±0.51 0.277±0.00
ENSMUST00000103123 N/A 5.035±4.06 15.324±0.84 10.298±3.07 4.675±0.81 N/A 3.640±0.65
ENSMUST00000109518 N/A N/A N/A N/A N/A N/A 1.102±0.06
ENSMUST00000128206 N/A 6.384±0.00 N/A N/A N/A N/A 2.906±0.00
ENSMUST00000156552 N/A N/A N/A N/A 6.018±0.00 N/A 0.316±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004NX CIL_0004NX_0002 CGP 2:157981803-158132297
CIL_0004NY CIL_0004NY_0002 CGP 2:158028497-158146436

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000993 ISS RNA polymerase II core binding
GO:0005515 IEA protein binding
GO:0005634 ISS nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0008284 ISS positive regulation of cell proliferation
GO:0010564 ISS regulation of cell cycle process
GO:0016591 ISS DNA-directed RNA polymerase II, holoenzyme
GO:0045944 ISS positive regulation of transcription from RNA polymerase II promoter
GO:0070940 ISS dephosphorylation of RNA polymerase II C-terminal domain

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000038113 rprd1b regulation of nuclear pre-mRNA domain containing 1B protein_coding Danio_rerio
ENSG00000101413 RPRD1B regulation of nuclear pre-mRNA domain containing 1B protein_coding Homo_sapiens

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