C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: regulation of nuclear pre-mRNA domain containing 1B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000373433 RPRD1B-001 ENSG00000101413 9606 + 20:38033546-38092366 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartLiverMuscleOvaryTestisENST00000373433
Transcript ID Adipose Bladder Brain Breast Colon Heart Liver Muscle Ovary Testis
ENST00000373433 6.370±0.00 1.883±0.00 1.395±0.00 3.999±0.03 3.203±2.08 2.197±0.00 3.017±0.00 4.567±0.00 7.248±2.68 6.563±0.24

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004NX CIL_0004NX_0001 CGP 20:37983007-38127780
CIL_0004NY CIL_0004NY_0001 CGP 20:38033546-38166578

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000993 IDA RNA polymerase II core binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0008284 IDA positive regulation of cell proliferation
GO:0010564 IDA regulation of cell cycle process
GO:0016591 IDA DNA-directed RNA polymerase II, holoenzyme
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0070940 IMP dephosphorylation of RNA polymerase II C-terminal domain

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000103123 Rprd1b-001 protein_coding Mus_musculus 0 1657
ENSMUST00000029180 Rprd1b-004 protein_coding Mus_musculus 0 1572
ENSMUST00000109518 Rprd1b-002 protein_coding Mus_musculus 0 1351
ENSMUST00000156552 Rprd1b-003 processed_transcript Mus_musculus 0 1024
ENSMUST00000109519 Rprd1b-005 retained_intron Mus_musculus 0 1011
ENSMUST00000152452 Rprd1b-008 protein_coding Mus_musculus 0 987
ENSMUST00000128206 Rprd1b-006 protein_coding Mus_musculus 0 730
ENSMUST00000135603 Rprd1b-007 protein_coding Mus_musculus 0 481

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