C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004NY_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000101413-ENSG00000198959 CGP 9606 20:38033546-38166578
GeneTranscriptPositionBiotype
ENSG00000101413 (RPRD1B)
regulation of nuclear pre-mRNA domain containing 1B 		ENST00000373433 (RPRD1B-001) 38033546-38092366 protein_coding
ENST00000449186 (RPRD1B-004) 38049753-38089839 protein_coding
ENST00000462548 (RPRD1B-003) 38033725-38091237 nonsense_mediated_decay
ENST00000471511 (RPRD1B-005) 38083896-38090259 processed_transcript
ENST00000484683 (RPRD1B-006) 38085376-38090008 processed_transcript
ENST00000495457 (RPRD1B-002) 38033832-38059425 nonsense_mediated_decay
ENST00000614670 (RPRD1B-009) 38066082-38127780 protein_coding
ENST00000618318 (RPRD1B-008) 38065878-38125081 processed_transcript
ENST00000622494 (RPRD1B-007) 38066181-38070617 protein_coding
ENSG00000198959 (TGM2)
transglutaminase 2 		ENST00000361475 (TGM2-002) 38127387-38165372 protein_coding
ENST00000373403 (TGM2-004) 38146734-38166508 protein_coding
ENST00000453095 (TGM2-003) 38151012-38166578 protein_coding
ENST00000468262 (TGM2-006) 38137950-38165282 retained_intron
ENST00000469269 (TGM2-007) 38128461-38133760 retained_intron
ENST00000474777 (TGM2-001) 38145350-38165259 retained_intron
ENSG00000264767 (RN7SL237P)
RNA, 7SL, cytoplasmic 237, pseudogene 		ENST00000580912 (RN7SL237P-201) 38098414-38098700 misc_RNA
ENSG00000277550 (RP5-1057B20.3)
 ENST00000615357 (RP5-1057B20.3-001) 38103524-38104961 lincRNA
CIL_0004NY_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000027651-ENSMUSG00000037820 CGP 10090 2:158028497-158146436
GeneTranscriptPositionBiotype
ENSMUSG00000027651 (Rprd1b)
regulation of nuclear pre-mRNA domain containing 1B 		ENSMUST00000029180 (Rprd1b-004) 158028721-158078207 protein_coding
ENSMUST00000103123 (Rprd1b-001) 158028497-158078207 protein_coding
ENSMUST00000109518 (Rprd1b-002) 158028701-158078207 protein_coding
ENSMUST00000109519 (Rprd1b-005) 158028508-158048710 retained_intron
ENSMUST00000128206 (Rprd1b-006) 158043423-158075067 protein_coding
ENSMUST00000135603 (Rprd1b-007) 158047959-158070510 protein_coding
ENSMUST00000152452 (Rprd1b-008) 158028799-158132297 protein_coding
ENSMUST00000156552 (Rprd1b-003) 158028692-158078207 processed_transcript
ENSMUSG00000037820 (Tgm2)
transglutaminase 2, C polypeptide 		ENSMUST00000103122 (Tgm2-001) 158116402-158146436 protein_coding
ENSMUST00000140923 (Tgm2-003) 158130380-158146366 retained_intron
ENSMUST00000152690 (Tgm2-002) 158134322-158139736 processed_transcript
ENSMUST00000174718 (Tgm2-004) 158127345-158146393 nonsense_mediated_decay
ENSMUSG00000092283 (Gm20412)
predicted gene 20412 		ENSMUST00000173249 (Gm20412-001) 158117154-158117905 processed_transcript

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004NY_0001ENSG00000101413ENST00000373433ENST00000449186ENST00000462548ENST00000471511ENST00000484683ENST00000495457ENST00000614670ENST00000618318ENST00000622494ENSG00000198959ENST00000361475ENST00000373403ENST00000453095ENST00000468262ENST00000469269ENST00000474777ENSG00000264767ENST00000580912ENSG00000277550ENST00000615357CIL_0004NY_0002ENSMUSG00000027651ENSMUST00000029180ENSMUST00000103123ENSMUST00000109518ENSMUST00000109519ENSMUST00000128206ENSMUST00000135603ENSMUST00000152452ENSMUST00000156552ENSMUSG00000037820ENSMUST00000103122ENSMUST00000140923ENSMUST00000152690ENSMUST00000174718ENSMUSG00000092283ENSMUST00000173249
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004NY_0001ENSG00000101413ENST00000373433ENST00000462548ENSG00000198959ENST00000361475ENST00000468262ENST00000469269ENSG00000264767ENST00000580912ENSG00000277550ENST00000615357CIL_0004NY_0002ENSMUSG00000027651ENSMUST00000029180ENSMUST00000103123ENSMUST00000109518ENSMUST00000128206ENSMUST00000156552ENSMUSG00000037820ENSMUST00000103122ENSMUST00000174718ENSMUSG00000092283ENSMUST00000173249
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000101413 ENST00000373433 6.370±0.00 N/A 1.883±0.00 1.395±0.00 3.999±0.03 3.203±2.08 2.197±0.00 N/A 3.017±0.00 N/A 4.567±0.00 7.248±2.68 N/A 6.563±0.24
ENST00000449186 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000462548 N/A N/A N/A 1.555±0.00 N/A N/A N/A N/A N/A N/A 5.226±0.00 N/A N/A N/A
ENST00000471511 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484683 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000495457 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000614670 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000618318 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000622494 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000198959 ENST00000361475 N/A N/A 2.829±0.00 0.765±0.00 5.964±0.00 1.176±0.00 N/A N/A 9.100±0.00 8.962±0.00 N/A 5.246±0.57 157.247±73.44 N/A
ENST00000373403 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000453095 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468262 N/A N/A 2.339±0.00 1.293±0.00 8.799±0.00 2.753±0.00 10.716±0.00 7.930±0.00 17.498±0.00 23.704±0.00 N/A 22.753±12.77 303.815±0.00 6.916±0.00
ENST00000469269 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 14.513±0.00 215.327±0.00 N/A
ENST00000474777 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000264767 ENST00000580912 N/A N/A N/A 0.142±0.00 N/A N/A 0.061±0.00 0.130±0.00 N/A N/A N/A 0.278±0.00 N/A N/A
ENSG00000277550 ENST00000615357 0.071±0.00 0.216±0.00 N/A 0.040±0.01 0.024±0.00 0.051±0.04 0.136±0.07 0.111±0.00 0.076±0.00 N/A 0.006±0.00 0.160±0.20 0.043±0.02 0.158±0.08
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027651 ENSMUST00000029180 N/A 15.398±2.59 N/A 1.793±0.10 N/A N/A N/A N/A 10.881±0.00 N/A 5.228±0.86 5.281±0.51 N/A 0.277±0.00
ENSMUST00000103123 N/A N/A N/A 5.035±4.06 N/A 15.324±0.84 N/A N/A 10.298±3.07 N/A 4.675±0.81 N/A N/A 3.640±0.65
ENSMUST00000109518 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.102±0.06
ENSMUST00000109519 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000128206 N/A N/A N/A 6.384±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.906±0.00
ENSMUST00000135603 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000152452 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156552 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.018±0.00 N/A N/A 0.316±0.00
ENSMUSG00000037820 ENSMUST00000103122 121.524±38.54 29.302±7.83 92.525±2.32 4.010±0.47 126.614±23.53 47.484±3.84 60.873±5.82 86.734±10.89 41.088±6.63 130.682±11.88 22.630±4.04 105.980±41.72 137.114±78.00 3.397±1.28
ENSMUST00000140923 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000152690 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000174718 N/A N/A N/A N/A 138.997±1.10 N/A N/A N/A N/A 123.591±0.00 N/A 126.888±5.31 N/A N/A
ENSMUSG00000092283 ENSMUST00000173249 159.717±6.36 N/A 163.591±2.46 N/A N/A N/A 104.148±2.51 132.336±4.06 N/A N/A 43.809±4.05 87.258±2.94 290.946±121.78 N/A

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