C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: troponin C type 2 (fast)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000101470 TNNC2 9606 - 20:45823214-45833745 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000372555 TNNC2-003 45823214-45827341 protein_coding
  ENST00000372557 TNNC2-001 45823214-45833745 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000372555ENST00000372557
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000372555 0.734±0.00 0.575±0.00 0.506±0.00 1.402±1.16 227.237±221.94 1.111±0.91 0.114±0.00 0.091±0.00 4.265±4.19 1.683±0.64 4173.710±2894.43 2.620±0.77 0.302±0.10 16.426±0.00
ENST00000372557 N/A 0.223±0.00 N/A N/A N/A 0.839±0.00 N/A N/A N/A 1.496±0.00 N/A 0.608±0.00 0.593±0.00 0.892±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00002K CIL_00002K_0001 CGP 20:45812576-45833745
CIL_0000IO CIL_0000IO_0001 CGP 20:45823214-45843275

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003009 IDA skeletal muscle contraction
GO:0003779 IDA actin binding
GO:0005509 IEA calcium ion binding
GO:0005578 IEA proteinaceous extracellular matrix
GO:0005829 TAS cytosol
GO:0005861 IDA troponin complex
GO:0006937 TAS regulation of muscle contraction
GO:0007165 IEA signal transduction
GO:0030049 TAS muscle filament sliding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000070835 tnnc2 troponin C type 2 (fast) protein_coding Danio_rerio
ENSDARG00000095002 TNNC2 (2 of 2) troponin C type 2 (fast) protein_coding Danio_rerio
ENSMUSG00000017300 Tnnc2 troponin C2, fast protein_coding Mus_musculus

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