C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: troponin C type 2 (fast)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000372555 TNNC2-003 ENSG00000101470 9606 - 20:45823214-45827341 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000372555
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000372555 0.734±0.00 0.575±0.00 0.506±0.00 1.402±1.16 227.237±221.94 1.111±0.91 0.114±0.00 0.091±0.00 4.265±4.19 1.683±0.64 4173.710±2894.43 2.620±0.77 0.302±0.10 16.426±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00002K CIL_00002K_0001 CGP 20:45812576-45833745
CIL_0000IO CIL_0000IO_0001 CGP 20:45823214-45843275

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003009 IDA skeletal muscle contraction
GO:0003779 IDA actin binding
GO:0005509 IEA calcium ion binding
GO:0005829 TAS cytosol
GO:0005861 IDA troponin complex
GO:0006937 TAS regulation of muscle contraction
GO:0030049 TAS muscle filament sliding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000103095 Tnnc2-001 protein_coding Mus_musculus 0 699
ENSMUST00000155443 Tnnc2-002 processed_transcript Mus_musculus 0 283
ENSMUST00000001439 Ube2c-002 protein_coding Mus_musculus 7e-38 161

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