C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: structural maintenance of chromosomes flexible hinge domain containing 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000101596 SMCHD1 9606 + 18:2655738-2805017 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000320876 SMCHD1-001 2655738-2805017 protein_coding
  ENST00000577300 SMCHD1-012 2703694-2706562 retained_intron
  ENST00000577880 SMCHD1-006 2700859-2802929 nonsense_mediated_decay
  ENST00000581226 SMCHD1-005 2688641-2697216 retained_intron
  ENST00000581383 SMCHD1-010 2724902-2727163 retained_intron
  ENST00000581631 SMCHD1-014 2728414-2739465 retained_intron
  ENST00000581711 SMCHD1-013 2707444-2722550 retained_intron
  ENST00000583344 SMCHD1-003 2760401-2769807 retained_intron
  ENST00000583441 SMCHD1-008 2751379-2753129 retained_intron
  ENST00000583800 SMCHD1-015 2796099-2801263 protein_coding
  ENST00000584897 SMCHD1-007 2706443-2802928 nonsense_mediated_decay
  ENST00000585229 SMCHD1-004 2700777-2702292 nonsense_mediated_decay
  ENST00000609587 SMCHD1-016 2728371-2728830 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000320876ENST00000577880ENST00000583441ENST00000584897
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000320876 3.229±0.00 3.020±0.00 1.266±0.00 1.584±0.35 2.467±0.93 4.260±0.37 2.351±0.83 2.133±0.33 7.189±6.54 2.404±0.49 1.154±0.43 2.950±1.55 1.923±0.75 5.488±1.04
ENST00000577880 1.273±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.703±1.03 6.899±0.00
ENST00000583441 N/A N/A 17.752±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000584897 N/A 2.737±0.00 3.451±0.00 1.290±0.37 2.101±0.00 3.647±1.47 1.384±0.00 2.020±1.06 0.584±0.00 2.377±0.00 0.645±0.06 4.691±0.00 0.628±0.11 5.609±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001740 IEA Barr body
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0005694 IEA chromosome
GO:0009048 IEA dosage compensation by inactivation of X chromosome
GO:0051276 IEA chromosome organization
GO:0060821 IEA inactivation of X chromosome by DNA methylation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000014836 smchd1 structural maintenance of chromosomes flexible hinge domain containing 1 protein_coding Danio_rerio
ENSDARG00000090920 SMCHD1 (2 of 2) structural maintenance of chromosomes flexible hinge domain containing 1 protein_coding Danio_rerio
ENSMUSG00000024054 Smchd1 SMC hinge domain containing 1 protein_coding Mus_musculus

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