C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: structural maintenance of chromosomes flexible hinge domain containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000584897 SMCHD1-007 ENSG00000101596 9606 + 18:2706443-2802928 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000584897
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000584897 2.737±0.00 3.451±0.00 1.290±0.37 2.101±0.00 3.647±1.47 1.384±0.00 2.020±1.06 0.584±0.00 2.377±0.00 0.645±0.06 4.691±0.00 0.628±0.11 5.609±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000127430 Smchd1-001 protein_coding Mus_musculus 0 2793
ENSMUST00000147111 Smchd1-004 retained_intron Mus_musculus 0 510
ENSMUST00000138193 Smchd1-002 processed_transcript Mus_musculus 0 416
ENSMUST00000182107 Smchd1-007 retained_intron Mus_musculus 0 274
ENSMUST00000136071 Smchd1-003 retained_intron Mus_musculus 0 224

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