C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SMC hinge domain containing 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000024054 Smchd1 10090 - 17:71344489-71475343 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000127430 Smchd1-001 71344489-71475343 protein_coding
  ENSMUST00000136071 Smchd1-003 71390481-71391727 retained_intron
  ENSMUST00000138193 Smchd1-002 71344489-71356496 processed_transcript
  ENSMUST00000147111 Smchd1-004 71348920-71361959 retained_intron
  ENSMUST00000182049 Smchd1-009 71346510-71349006 retained_intron
  ENSMUST00000182107 Smchd1-007 71357086-71361192 retained_intron
  ENSMUST00000182205 Smchd1-008 71350877-71353386 retained_intron
  ENSMUST00000182747 Smchd1-010 71472539-71475328 retained_intron
  ENSMUST00000183046 Smchd1-006 71393905-71394724 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000127430ENSMUST00000138193
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000127430 2.626±1.06 1.893±0.57 3.445±0.39 3.890±0.23 2.560±1.45 0.410±0.00 1.433±0.58 0.799±0.33 3.882±3.04 2.777±0.71 0.869±0.08 4.037±2.96 11.526±4.44 1.699±0.56
ENSMUST00000138193 N/A N/A 5.884±0.00 4.912±0.62 N/A N/A N/A N/A 6.392±0.13 N/A 0.992±0.19 9.015±0.00 13.189±0.27 1.426±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001740 IDA Barr body
GO:0005524 IEA ATP binding
GO:0009048 IMP dosage compensation by inactivation of X chromosome
GO:0051276 IEA chromosome organization
GO:0060821 IMP inactivation of X chromosome by DNA methylation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000014836 smchd1 structural maintenance of chromosomes flexible hinge domain containing 1 protein_coding Danio_rerio
ENSDARG00000090920 SMCHD1 (2 of 2) structural maintenance of chromosomes flexible hinge domain containing 1 protein_coding Danio_rerio
ENSG00000101596 SMCHD1 structural maintenance of chromosomes flexible hinge domain containing 1 protein_coding Homo_sapiens

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