C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: structural maintenance of chromosomes flexible hinge domain containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000320876 SMCHD1-001 ENSG00000101596 9606 + 18:2655738-2805017 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000320876
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000320876 3.229±0.00 3.020±0.00 1.266±0.00 1.584±0.35 2.467±0.93 4.260±0.37 2.351±0.83 2.133±0.33 7.189±6.54 2.404±0.49 1.154±0.43 2.950±1.55 1.923±0.75 5.488±1.04

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001740 IEA Barr body
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0005694 IEA chromosome
GO:0009048 IEA dosage compensation by inactivation of X chromosome
GO:0051276 IEA chromosome organization
GO:0060821 IEA inactivation of X chromosome by DNA methylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000127430 Smchd1-001 protein_coding Mus_musculus 0 6427
ENSMUST00000147111 Smchd1-004 retained_intron Mus_musculus 0 507
ENSMUST00000138193 Smchd1-002 processed_transcript Mus_musculus 0 416
ENSMUST00000182107 Smchd1-007 retained_intron Mus_musculus 0 274
ENSMUST00000136071 Smchd1-003 retained_intron Mus_musculus 0 224

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