C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: sex comb on midleg-like 2 (Drosophila)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000102098 SCML2 9606 - X:18239314-18354727 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000251900 SCML2-001 18239314-18354727 protein_coding
  ENST00000398048 SCML2-201 18239318-18246755 protein_coding
  ENST00000420857 SCML2-002 18239314-18247885 protein_coding
  ENST00000491988 SCML2-003 18239385-18241225 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000251900ENST00000398048ENST00000420857ENST00000491988
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000251900 0.052±0.00 0.189±0.00 0.077±0.00 0.141±0.00 0.087±0.00 0.100±0.05 0.095±0.03 0.252±0.05 0.044±0.02 0.055±0.00 0.290±0.00 0.185±0.05 1.442±0.00
ENST00000398048 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.448±0.00 N/A 0.211±0.00 N/A
ENST00000420857 N/A N/A 0.112±0.00 N/A N/A 0.040±0.00 0.083±0.05 N/A 0.044±0.00 0.052±0.00 0.291±0.12 0.185±0.04 N/A
ENST00000491988 N/A N/A N/A 0.189±0.00 0.268±0.08 0.190±0.00 N/A N/A 0.068±0.00 N/A 1.245±0.02 1.896±1.54 9.969±7.88

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002L4 CIL_0002L4_0002 CGP X:18239314-18653629

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 TAS DNA binding
GO:0003700 TAS sequence-specific DNA binding transcription factor activity
GO:0005515 IEA protein binding
GO:0005634 IDA:IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0009653 TAS anatomical structure morphogenesis
GO:0031519 IDA PcG protein complex
GO:0043565 IEA sequence-specific DNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000012949 SCML2 sex comb on midleg-like 2 (Drosophila) protein_coding Danio_rerio
ENSMUSG00000000037 Scml2 sex comb on midleg-like 2 (Drosophila) protein_coding Mus_musculus

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