C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: phosphate cytidylyltransferase 1, choline, beta
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000102230 PCYT1B 9606 - X:24558087-24672677 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000356768 PCYT1B-005 24561842-24647158 protein_coding
  ENST00000379144 PCYT1B-004 24561842-24647236 protein_coding
  ENST00000379145 PCYT1B-003 24558087-24672677 protein_coding
  ENST00000496020 PCYT1B-001 24562401-24647038 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastHeartLiverOvaryPlacentaTestisENST00000356768ENST00000379144ENST00000379145ENST00000496020
Transcript ID Bladder Brain Breast Heart Liver Ovary Placenta Testis
ENST00000356768 N/A N/A N/A N/A N/A 0.043±0.00 N/A 2.921±0.18
ENST00000379144 0.160±0.00 N/A N/A N/A N/A N/A 0.406±0.23 2.243±0.46
ENST00000379145 0.094±0.00 4.440±0.00 0.074±0.07 0.053±0.03 0.042±0.03 0.156±0.19 0.407±0.00 1.718±0.00
ENST00000496020 N/A N/A N/A N/A N/A 0.080±0.04 0.596±0.00 12.994±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00084H CIL_00084H_0001 VISTA X:24441239-25041771
CIL_0008NE CIL_0008NE_0001 VISTA X:24504486-25106506
CIL_0008NF CIL_0008NF_0001 VISTA X:24546114-25147616

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001541 IEA ovarian follicle development
GO:0003824 IEA catalytic activity
GO:0004105 IEA choline-phosphate cytidylyltransferase activity
GO:0005737 TAS cytoplasm
GO:0005789 TAS endoplasmic reticulum membrane
GO:0006644 TAS phospholipid metabolic process
GO:0006656 TAS phosphatidylcholine biosynthetic process
GO:0006657 IEA CDP-choline pathway
GO:0007283 IEA spermatogenesis
GO:0009058 IEA biosynthetic process
GO:0044281 TAS small molecule metabolic process
GO:0046474 TAS glycerophospholipid biosynthetic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000044456 pcyt1bb phosphate cytidylyltransferase 1, choline, beta b protein_coding Danio_rerio
ENSDARG00000058162 pcyt1ba phosphate cytidylyltransferase 1, choline, beta a protein_coding Danio_rerio
ENSMUSG00000035246 Pcyt1b phosphate cytidylyltransferase 1, choline, beta isoform protein_coding Mus_musculus

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