C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0008NE_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs116 VISTA 9606 X:24504486-25106506
GeneTranscriptPositionBiotype
ENSG00000004848 (ARX)
aristaless related homeobox 		ENST00000379044 (ARX-001) 25003694-25015948 protein_coding
ENSG00000067992 (PDK3)
pyruvate dehydrogenase kinase, isozyme 3 		ENST00000379162 (PDK3-001) 24465221-24534425 protein_coding
ENST00000441463 (PDK3-003) 24465456-24539837 protein_coding
ENST00000493226 (PDK3-002) 24494741-24499081 processed_transcript
ENSG00000101868 (POLA1)
polymerase (DNA directed), alpha 1, catalytic subunit 		ENST00000379059 (POLA1-001) 24693947-24996986 protein_coding
ENST00000379068 (POLA1-005) 24693919-24996986 protein_coding
ENST00000480125 (POLA1-002) 24745503-24810781 processed_transcript
ENST00000493342 (POLA1-003) 24726933-24734353 processed_transcript
ENST00000494204 (POLA1-004) 24812830-24841983 processed_transcript
ENST00000611764 (POLA1-201) 24693947-24996983 protein_coding
ENSG00000102230 (PCYT1B)
phosphate cytidylyltransferase 1, choline, beta 		ENST00000356768 (PCYT1B-005) 24561842-24647158 protein_coding
ENST00000379144 (PCYT1B-004) 24561842-24647236 protein_coding
ENST00000379145 (PCYT1B-003) 24558087-24672677 protein_coding
ENST00000496020 (PCYT1B-001) 24562401-24647038 nonsense_mediated_decay
ENSG00000214111 (RP1-258N20.3)
 ENST00000438281 (RP1-258N20.3-001) 25029545-25030235 processed_pseudogene
ENSG00000214124 (SNRPEP9)
small nuclear ribonucleoprotein polypeptide E pseudogene 9 		ENST00000436794 (SNRPEP9-001) 24513450-24513687 processed_pseudogene
ENSG00000232472 (EEF1B2P3)
eukaryotic translation elongation factor 1 beta 2 pseudogene 3 		ENST00000447718 (EEF1B2P3-001) 24788392-24789069 processed_pseudogene
ENSG00000236836 (PCYT1B-AS1)
PCYT1B antisense RNA 1 		ENST00000432626 (PCYT1B-AS1-001) 24650073-24658237 antisense
ENSG00000240439 (RN7SL91P)
RNA, 7SL, cytoplasmic 91, pseudogene 		ENST00000469313 (RN7SL91P-201) 25060649-25060939 misc_RNA
ENSG00000260822 (GS1-358P8.4)
 ENST00000568479 (GS1-358P8.4-001) 24545516-24550466 sense_overlapping
CIL_0008NE_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs116 VISTA 10090 X:93196691-93798662
GeneTranscriptPositionBiotype
ENSMUSG00000006678 (Pola1)
polymerase (DNA directed), alpha 1 		ENSMUST00000006856 (Pola1-001) 93304767-93632155 protein_coding
ENSMUST00000124236 (Pola1-002) 93623298-93632115 processed_transcript
ENSMUST00000127718 (Pola1-003) 93623076-93632143 retained_intron
ENSMUST00000142479 (Pola1-004) 93480490-93490946 processed_transcript
ENSMUSG00000035232 (Pdk3)
pyruvate dehydrogenase kinase, isoenzyme 3 		ENSMUST00000045748 (Pdk3-001) 93764607-93832201 protein_coding
ENSMUST00000134502 (Pdk3-002) 93782150-93789325 processed_transcript
ENSMUST00000154717 (Pdk3-003) 93765096-93769120 processed_transcript
ENSMUSG00000035246 (Pcyt1b)
phosphate cytidylyltransferase 1, choline, beta isoform 		ENSMUST00000045898 (Pcyt1b-001) 93675102-93749951 protein_coding
ENSMUST00000113933 (Pcyt1b-003) 93654863-93749951 protein_coding
ENSMUST00000146263 (Pcyt1b-002) 93731562-93734856 processed_transcript
ENSMUSG00000035277 (Arx)
aristaless related homeobox 		ENSMUST00000046565 (Arx-001) 93286529-93298357 protein_coding
ENSMUST00000113947 (Arx-002) 93286522-93298357 protein_coding
ENSMUST00000187010 (Arx-003) 93286445-93288382 retained_intron
ENSMUSG00000083207 (Gm14780)
predicted gene 14780 		ENSMUST00000118387 (Gm14780-001) 93527573-93530309 processed_pseudogene
ENSMUSG00000088445 (Gm23557)
predicted gene, 23557 		ENSMUST00000157820 (Gm23557-201) 93573731-93573868 snoRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008NE_0001ENSG00000004848ENST00000379044ENSG00000067992ENST00000379162ENST00000441463ENST00000493226ENSG00000101868ENST00000379059ENST00000379068ENST00000480125ENST00000493342ENST00000494204ENST00000611764ENSG00000102230ENST00000356768ENST00000379144ENST00000379145ENST00000496020ENSG00000214111ENST00000438281ENSG00000214124ENST00000436794ENSG00000232472ENST00000447718ENSG00000236836ENST00000432626ENSG00000240439ENST00000469313ENSG00000260822ENST00000568479CIL_0008NE_0002ENSMUSG00000006678ENSMUST00000006856ENSMUST00000124236ENSMUST00000127718ENSMUST00000142479ENSMUSG00000035232ENSMUST00000045748ENSMUST00000134502ENSMUST00000154717ENSMUSG00000035246ENSMUST00000045898ENSMUST00000113933ENSMUST00000146263ENSMUSG00000035277ENSMUST00000046565ENSMUST00000113947ENSMUST00000187010ENSMUSG00000083207ENSMUST00000118387ENSMUSG00000088445ENSMUST00000157820
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008NE_0001ENSG00000004848ENST00000379044ENSG00000067992ENST00000379162ENST00000441463ENSG00000101868ENST00000379059ENST00000379068ENST00000494204ENST00000611764ENSG00000102230ENST00000356768ENST00000379144ENST00000379145ENST00000496020ENSG00000214111ENST00000438281ENSG00000214124ENST00000436794ENSG00000232472ENST00000447718ENSG00000236836ENST00000432626ENSG00000240439ENST00000469313ENSG00000260822ENST00000568479CIL_0008NE_0002ENSMUSG00000006678ENSMUST00000006856ENSMUST00000124236ENSMUST00000127718ENSMUSG00000035232ENSMUST00000045748ENSMUSG00000035246ENSMUST00000045898ENSMUST00000113933ENSMUST00000146263ENSMUSG00000035277ENSMUST00000046565ENSMUST00000113947ENSMUST00000187010ENSMUSG00000083207ENSMUST00000118387ENSMUSG00000088445ENSMUST00000157820
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000004848 ENST00000379044 0.018±0.00 0.092±0.00 N/A 2.037±0.74 0.394±0.00 0.072±0.05 N/A 0.087±0.00 N/A 0.496±0.46 2.377±1.68 23.275±25.60 0.217±0.01 8.552±4.98
ENSG00000067992 ENST00000379162 N/A 0.908±0.00 N/A N/A N/A 1.085±0.23 N/A 0.914±0.05 0.830±0.40 1.011±0.32 0.068±0.00 N/A 0.437±0.01 N/A
ENST00000441463 2.551±0.00 2.976±0.00 12.174±0.00 4.874±3.88 3.462±2.68 5.417±2.84 0.426±0.16 2.064±0.60 3.356±0.75 3.549±0.60 1.090±0.80 5.532±3.88 3.125±0.61 13.547±5.28
ENST00000493226 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000101868 ENST00000379059 1.853±0.00 0.894±0.00 N/A 0.909±0.00 1.600±0.00 1.330±0.05 N/A 1.696±0.00 0.149±0.00 N/A N/A 0.906±0.00 0.534±0.18 3.328±0.00
ENST00000379068 N/A 0.692±0.00 0.447±0.00 0.159±0.00 N/A 1.002±0.25 0.811±0.63 N/A 0.786±0.00 1.386±0.21 1.284±0.00 2.760±1.26 1.884±0.22 1.603±0.00
ENST00000480125 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000493342 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000494204 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.700±0.00 N/A N/A N/A
ENST00000611764 N/A N/A N/A 0.456±0.00 N/A N/A N/A 0.321±0.00 0.242±0.00 N/A 0.499±0.00 0.398±0.00 N/A N/A
ENSG00000102230 ENST00000356768 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.043±0.00 N/A 2.921±0.18
ENST00000379144 N/A N/A 0.160±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.406±0.23 2.243±0.46
ENST00000379145 N/A N/A 0.094±0.00 4.440±0.00 0.074±0.07 N/A 0.053±0.03 N/A 0.042±0.03 N/A N/A 0.156±0.19 0.407±0.00 1.718±0.00
ENST00000496020 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.080±0.04 0.596±0.00 12.994±0.00
ENSG00000214111 ENST00000438281 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.026±0.00 0.037±0.00 0.039±0.00
ENSG00000214124 ENST00000436794 0.261±0.00 0.069±0.00 N/A N/A 2.929±0.00 2.544±0.00 N/A N/A N/A N/A N/A 0.137±0.00 N/A 0.136±0.00
ENSG00000232472 ENST00000447718 0.081±0.00 0.283±0.00 N/A 0.088±0.00 1.224±0.00 0.268±0.00 N/A 0.159±0.04 0.059±0.00 0.085±0.00 0.115±0.00 0.675±0.53 0.156±0.08 0.048±0.00
ENSG00000236836 ENST00000432626 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.512±0.00
ENSG00000240439 ENST00000469313 0.053±0.00 0.165±0.00 N/A N/A 0.112±0.00 0.255±0.00 N/A 0.385±0.00 N/A 0.156±0.00 0.049±0.00 N/A N/A N/A
ENSG00000260822 ENST00000568479 3.288±0.00 5.018±0.00 3.204±0.00 6.647±0.33 3.345±0.01 5.826±0.98 1.745±0.75 2.879±1.63 2.571±0.46 2.710±0.75 0.380±0.23 3.714±1.03 1.365±0.29 5.100±1.68
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000006678 ENSMUST00000006856 0.504±0.24 0.304±0.08 1.048±0.12 1.180±0.50 0.262±0.10 0.462±0.13 0.256±0.14 0.307±0.05 2.317±2.64 0.436±0.04 0.142±0.04 1.354±1.41 2.278±1.80 0.236±0.11
ENSMUST00000124236 N/A 0.586±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.209±0.00 0.547±0.08 N/A 0.322±0.00
ENSMUST00000127718 N/A N/A N/A N/A 0.081±0.00 N/A N/A 0.130±0.00 N/A N/A N/A 0.158±0.00 N/A N/A
ENSMUST00000142479 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000035232 ENSMUST00000045748 8.251±3.79 9.583±4.76 11.828±0.90 6.279±1.47 6.498±1.99 11.275±1.17 1.812±0.09 14.597±2.48 4.826±5.25 9.891±0.78 0.322±0.14 16.309±6.43 6.245±1.07 6.287±1.06
ENSMUST00000134502 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000154717 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000035246 ENSMUST00000045898 0.236±0.12 0.251±0.01 0.101±0.01 4.100±1.74 0.334±0.01 0.206±0.00 0.058±0.02 0.008±0.00 4.935±2.01 0.259±0.09 0.040±0.02 1.299±0.43 0.311±0.04 0.147±0.02
ENSMUST00000113933 0.538±0.34 0.171±0.09 N/A 3.664±0.00 0.252±0.00 0.233±0.11 0.019±0.00 0.041±0.02 0.027±0.01 0.278±0.02 0.025±0.00 0.910±0.31 0.151±0.04 0.446±0.16
ENSMUST00000146263 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.216±0.00 9.307±0.00 1.446±0.00 3.933±0.00
ENSMUSG00000035277 ENSMUST00000046565 0.013±0.00 0.247±0.01 N/A 12.144±10.43 N/A 0.202±0.00 N/A N/A 0.077±0.02 N/A 0.106±0.05 5.588±1.74 N/A 0.478±0.10
ENSMUST00000113947 0.015±0.01 0.243±0.04 N/A 7.353±4.26 0.034±0.01 0.205±0.07 0.011±0.00 0.034±0.00 0.020±0.01 0.027±0.00 0.060±0.03 9.188±2.28 0.012±0.00 0.366±0.16
ENSMUST00000187010 0.012±0.00 N/A N/A 0.330±0.00 N/A N/A N/A 0.022±0.00 N/A N/A 0.026±0.00 N/A N/A N/A
ENSMUSG00000083207 ENSMUST00000118387 0.102±0.00 N/A 0.030±0.00 0.012±0.00 0.028±0.00 0.064±0.03 N/A 0.028±0.00 0.145±0.12 0.011±0.00 N/A 0.063±0.04 N/A N/A
ENSMUSG00000088445 ENSMUST00000157820 N/A N/A N/A N/A N/A N/A N/A N/A 4.177±0.00 N/A N/A N/A N/A N/A

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