C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: HIV-1 Tat specific factor 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000102241 HTATSF1 9606 + X:136497079-136512346 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000218364 HTATSF1-001 136497511-136512346 protein_coding
  ENST00000425695 HTATSF1-003 136497234-136502877 protein_coding
  ENST00000448450 HTATSF1-002 136497221-136502941 protein_coding
  ENST00000535601 HTATSF1-201 136497079-136512342 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000218364ENST00000535601
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000218364 18.162±0.00 18.620±0.00 2.899±0.00 21.261±17.20 13.311±9.43 12.780±10.85 9.283±7.95 12.024±9.41 3.625±0.72 2.992±1.10 9.156±4.41 20.488±17.95 15.225±3.26 29.478±9.62
ENST00000535601 N/A N/A N/A 1.596±0.00 N/A N/A 2.296±0.28 2.334±1.09 1.491±0.84 3.736±0.00 11.071±0.00 10.233±8.83 13.427±0.00 13.346±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000K2 CIL_0000K2_0001 CGP X:136487887-136512346
CIL_0000K3 CIL_0000K3_0001 CGP X:136497079-136556807

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006357 TAS regulation of transcription from RNA polymerase II promoter
GO:0019079 TAS viral genome replication
GO:0032784 TAS regulation of DNA-templated transcription, elongation
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000056649 htatsf1 HIV TAT specific factor 1 protein_coding Danio_rerio
ENSMUSG00000067873 Htatsf1 HIV TAT specific factor 1 protein_coding Mus_musculus

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