C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: HIV TAT specific factor 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000067873 Htatsf1 10090 + X:57053583-57067183 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000088652 Htatsf1-001 57053615-57067183 protein_coding
  ENSMUST00000114751 Htatsf1-002 57053583-57057206 protein_coding
  ENSMUST00000134785 Htatsf1-003 57053898-57057204 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000088652ENSMUST00000114751ENSMUST00000134785
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000088652 3.279±0.56 N/A 10.336±1.11 25.462±17.60 3.326±2.18 1.548±0.27 6.502±0.91 3.639±0.95 5.656±3.69 3.623±1.17 35.790±4.92 17.508±22.22 95.354±73.91 12.178±15.99
ENSMUST00000114751 6.393±2.80 48.973±6.32 N/A N/A 11.373±4.31 8.574±1.34 4.871±1.71 4.650±1.52 2.785±1.38 9.814±4.18 N/A 21.453±7.15 N/A 1.361±0.18
ENSMUST00000134785 1.320±0.00 N/A 1.428±0.00 N/A 0.580±0.01 N/A N/A N/A 0.683±0.15 N/A N/A N/A 6.139±3.02 1.126±0.27

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000K2 CIL_0000K2_0002 CGP X:57043074-57067183
CIL_0000K3 CIL_0000K3_0002 CGP X:57053583-57106540

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008150 ND biological_process
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000056649 htatsf1 HIV TAT specific factor 1 protein_coding Danio_rerio
ENSG00000102241 HTATSF1 HIV-1 Tat specific factor 1 protein_coding Homo_sapiens

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