C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: HIV-1 Tat specific factor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000218364 HTATSF1-001 ENSG00000102241 9606 + X:136497511-136512346 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000218364
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000218364 18.162±0.00 18.620±0.00 2.899±0.00 21.261±17.20 13.311±9.43 12.780±10.85 9.283±7.95 12.024±9.41 3.625±0.72 2.992±1.10 9.156±4.41 20.488±17.95 15.225±3.26 29.478±9.62

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000K2 CIL_0000K2_0001 CGP X:136487887-136512346
CIL_0000K3 CIL_0000K3_0001 CGP X:136497079-136556807

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006357 TAS regulation of transcription from RNA polymerase II promoter
GO:0019079 TAS viral genome replication
GO:0032784 TAS regulation of DNA-templated transcription, elongation
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000088652 Htatsf1-001 protein_coding Mus_musculus 0 1426
ENSMUST00000114751 Htatsf1-002 protein_coding Mus_musculus 0 532
ENSMUST00000134785 Htatsf1-003 retained_intron Mus_musculus 0 261

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