C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tumor necrosis factor (ligand) superfamily, member 13b
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000102524 TNFSF13B 9606 + 13:108251240-108308484 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000375887 TNFSF13B-001 108269718-108308484 protein_coding
  ENST00000430559 TNFSF13B-201 108269629-108308484 protein_coding
  ENST00000479435 TNFSF13B-002 108270227-108303604 processed_transcript
  ENST00000486502 TNFSF13B-003 108251240-108270417 processed_transcript
  ENST00000493765 TNFSF13B-004 108303306-108307033 processed_transcript
  ENST00000542136 TNFSF13B-202 108269896-108303467 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000375887ENST00000430559ENST00000486502ENST00000493765ENST00000542136
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000375887 1.195±0.00 2.058±0.00 0.088±0.00 0.485±0.23 0.879±0.00 0.590±0.00 0.575±0.31 0.466±0.00 0.596±0.00 1.041±0.36 0.394±0.26 1.119±0.46 0.537±0.41
ENST00000430559 N/A 0.634±0.00 N/A N/A N/A 0.179±0.00 N/A N/A N/A N/A 0.154±0.00 0.435±0.29 N/A
ENST00000486502 N/A N/A N/A N/A N/A N/A N/A 1.666±0.00 N/A N/A N/A N/A N/A
ENST00000493765 N/A N/A N/A 1.212±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.951±0.00
ENST00000542136 N/A N/A N/A N/A N/A N/A 0.973±0.00 2.146±0.00 N/A 4.129±0.00 1.316±0.00 2.923±0.00 0.327±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00077K CIL_00077K_0001 CGP 13:108218379-108308484
CIL_00077M CIL_00077M_0001 CGP 13:108251240-109208007

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001782 IEA B cell homeostasis
GO:0002636 IEA positive regulation of germinal center formation
GO:0005102 TAS receptor binding
GO:0005125 IEA cytokine activity
GO:0005164 IEA tumor necrosis factor receptor binding
GO:0005515 IPI:IEA protein binding
GO:0005615 IEA extracellular space
GO:0005737 IDA cytoplasm
GO:0005886 IEA plasma membrane
GO:0006955 IEA immune response
GO:0007165 TAS signal transduction
GO:0008283 TAS cell proliferation
GO:0008284 TAS positive regulation of cell proliferation
GO:0016020 IEA membrane
GO:0016021 NAS integral component of membrane
GO:0030890 IEA positive regulation of B cell proliferation
GO:0031295 IEA T cell costimulation
GO:0031296 IEA B cell costimulation
GO:0042102 IEA positive regulation of T cell proliferation
GO:0048305 IEA immunoglobulin secretion
GO:0048471 IDA perinuclear region of cytoplasm
GO:0050776 IEA regulation of immune response

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000012945 tnfsf13b tumor necrosis factor (ligand) superfamily, member 13b protein_coding Danio_rerio
ENSMUSG00000031497 Tnfsf13b tumor necrosis factor (ligand) superfamily, member 13b protein_coding Mus_musculus

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