C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tumor necrosis factor (ligand) superfamily, member 13b
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000375887 TNFSF13B-001 ENSG00000102524 9606 + 13:108269718-108308484 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000375887
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000375887 1.195±0.00 2.058±0.00 0.088±0.00 0.485±0.23 0.879±0.00 0.590±0.00 0.575±0.31 0.466±0.00 0.596±0.00 1.041±0.36 0.394±0.26 1.119±0.46 0.537±0.41

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00077K CIL_00077K_0001 CGP 13:108218379-108308484
CIL_00077M CIL_00077M_0001 CGP 13:108251240-109208007

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001782 IEA B cell homeostasis
GO:0002636 IEA positive regulation of germinal center formation
GO:0005102 TAS receptor binding
GO:0005125 IEA cytokine activity
GO:0005164 IEA tumor necrosis factor receptor binding
GO:0005515 IPI:IEA protein binding
GO:0005615 IEA extracellular space
GO:0005737 IDA cytoplasm
GO:0005886 IEA plasma membrane
GO:0006955 IEA immune response
GO:0007165 TAS signal transduction
GO:0008283 TAS cell proliferation
GO:0008284 TAS positive regulation of cell proliferation
GO:0016020 IEA membrane
GO:0016021 NAS integral component of membrane
GO:0030890 IEA positive regulation of B cell proliferation
GO:0031295 IEA T cell costimulation
GO:0031296 IEA B cell costimulation
GO:0042102 IEA positive regulation of T cell proliferation
GO:0048305 IEA immunoglobulin secretion
GO:0048471 IDA perinuclear region of cytoplasm
GO:0050776 IEA regulation of immune response

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000033892 Tnfsf13b-201 protein_coding Mus_musculus 0 313

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