C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: nucleoporin 93kDa
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000102900 NUP93 9606 + 16:56730105-56850286 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000308159 NUP93-001 56730105-56844769 protein_coding
  ENST00000542526 NUP93-004 56783456-56850286 protein_coding
  ENST00000562496 NUP93-021 56740714-56805552 protein_coding
  ENST00000563405 NUP93-008 56836625-56839216 protein_coding
  ENST00000563437 NUP93-012 56831515-56833389 retained_intron
  ENST00000563465 NUP93-010 56841641-56844763 retained_intron
  ENST00000563486 NUP93-007 56837625-56839935 protein_coding
  ENST00000563858 NUP93-023 56730118-56832353 protein_coding
  ENST00000564278 NUP93-009 56839400-56844752 retained_intron
  ENST00000564887 NUP93-003 56781658-56844764 protein_coding
  ENST00000566315 NUP93-020 56730129-56805597 protein_coding
  ENST00000566678 NUP93-013 56748349-56805686 protein_coding
  ENST00000566727 NUP93-015 56781829-56821542 processed_transcript
  ENST00000567081 NUP93-016 56783380-56805562 protein_coding
  ENST00000567641 NUP93-018 56782246-56829021 protein_coding
  ENST00000568283 NUP93-017 56782250-56805632 protein_coding
  ENST00000568656 NUP93-019 56747911-56818709 protein_coding
  ENST00000569322 NUP93-011 56839010-56844764 protein_coding
  ENST00000569595 NUP93-014 56781829-56805615 processed_transcript
  ENST00000569842 NUP93-002 56730130-56844769 protein_coding
  ENST00000569863 NUP93-022 56730149-56823798 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000308159ENST00000542526ENST00000563405ENST00000563437ENST00000563465ENST00000564887ENST00000567641ENST00000568656ENST00000569842
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000308159 11.236±0.00 9.731±0.00 N/A 5.353±0.00 6.620±0.00 6.787±0.00 3.468±2.50 10.776±0.00 2.391±1.01 8.624±0.00 3.983±3.02 14.994±4.12 13.200±1.52 38.196±6.17
ENST00000542526 N/A N/A 0.113±0.00 0.827±0.00 N/A N/A N/A 0.116±0.00 N/A N/A 0.089±0.00 N/A N/A N/A
ENST00000563405 N/A N/A N/A N/A N/A N/A 2.730±0.00 2.151±0.00 N/A N/A N/A N/A N/A N/A
ENST00000563437 N/A N/A 1.551±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000563465 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 14.702±0.00 N/A N/A
ENST00000564887 N/A N/A 0.393±0.00 1.523±0.00 N/A N/A N/A N/A N/A N/A N/A 0.959±0.00 N/A N/A
ENST00000567641 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.168±0.00 N/A N/A N/A
ENST00000568656 N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.348±0.00 5.155±2.06 N/A N/A N/A
ENST00000569842 N/A N/A N/A N/A 1.372±0.40 N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000450 CIL_000450_0002 CGP 16:56730105-56915850

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000278 TAS mitotic cell cycle
GO:0005635 TAS nuclear envelope
GO:0005643 IEA:IDA nuclear pore
GO:0005975 TAS carbohydrate metabolic process
GO:0006810 IEA transport
GO:0007077 TAS mitotic nuclear envelope disassembly
GO:0008645 TAS hexose transport
GO:0010827 TAS regulation of glucose transport
GO:0015031 IEA protein transport
GO:0015758 TAS glucose transport
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0017056 IMP structural constituent of nuclear pore
GO:0019221 TAS cytokine-mediated signaling pathway
GO:0031965 IDA nuclear membrane
GO:0034399 IDA nuclear periphery
GO:0044281 TAS small molecule metabolic process
GO:0051028 IEA mRNA transport
GO:0051292 IMP nuclear pore complex assembly
GO:0055085 TAS transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000003487 nup93 nucleoporin 93 protein_coding Danio_rerio
ENSMUSG00000032939 Nup93 nucleoporin 93 protein_coding Mus_musculus

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