C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ubiquitin specific peptidase 10
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000103194 USP10 9606 + 16:84699978-84779922 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000219473 USP10-001 84699978-84779581 protein_coding
  ENST00000540269 USP10-002 84699995-84779922 nonsense_mediated_decay
  ENST00000562092 USP10-007 84699995-84740312 processed_transcript
  ENST00000562283 USP10-013 84700004-84744923 protein_coding
  ENST00000562743 USP10-005 84699986-84745211 processed_transcript
  ENST00000563023 USP10-012 84733209-84744911 retained_intron
  ENST00000563048 USP10-003 84700004-84779015 nonsense_mediated_decay
  ENST00000563386 USP10-010 84700008-84744866 nonsense_mediated_decay
  ENST00000563433 USP10-019 84759278-84764170 retained_intron
  ENST00000563892 USP10-008 84699995-84760236 protein_coding
  ENST00000564566 USP10-009 84700002-84709322 processed_transcript
  ENST00000566378 USP10-016 84759836-84763013 retained_intron
  ENST00000566512 USP10-011 84733138-84744780 retained_intron
  ENST00000567526 USP10-018 84768267-84778987 protein_coding
  ENST00000569038 USP10-014 84700029-84768270 protein_coding
  ENST00000569511 USP10-006 84699995-84733061 processed_transcript
  ENST00000569925 USP10-017 84768265-84779306 protein_coding
  ENST00000570053 USP10-015 84700040-84768275 protein_coding
  ENST00000570191 USP10-004 84700004-84779194 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000219473ENST00000540269ENST00000562283ENST00000562743ENST00000563048ENST00000563386ENST00000566512ENST00000570191
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000219473 N/A N/A 2.456±0.00 2.353±0.00 N/A 2.152±0.00 1.937±0.00 0.520±0.00 4.700±0.00 1.712±0.00 N/A 4.047±2.77 4.405±0.00 1.464±0.00
ENST00000540269 2.322±0.00 7.133±0.00 N/A N/A 7.363±0.00 1.391±0.00 N/A 1.324±0.00 N/A 0.973±0.00 N/A 10.573±0.00 N/A N/A
ENST00000562283 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 14.680±0.00 N/A N/A N/A
ENST00000562743 N/A N/A N/A 4.937±0.00 N/A N/A N/A N/A N/A N/A N/A 3.366±0.00 N/A N/A
ENST00000563048 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.951±0.00 N/A N/A N/A N/A
ENST00000563386 12.029±0.00 N/A N/A N/A N/A N/A N/A 7.413±0.00 N/A N/A N/A N/A N/A N/A
ENST00000566512 N/A N/A N/A N/A 22.214±0.00 12.528±0.00 N/A N/A 15.384±0.00 N/A N/A N/A N/A N/A
ENST00000570191 N/A 4.356±0.00 N/A N/A N/A N/A N/A 1.828±0.00 N/A N/A 1.376±0.00 4.068±0.00 6.429±0.00 3.297±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000IC CIL_0000IC_0001 CGP 16:84648525-84779922

Gene Ontology
GO IDEvidence TypeGO Description
GO:0002039 IPI p53 binding
GO:0004197 IMP cysteine-type endopeptidase activity
GO:0004221 IMP ubiquitin thiolesterase activity
GO:0004843 IMP ubiquitin-specific protease activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005769 IDA early endosome
GO:0006281 IEA DNA repair
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0006914 IEA autophagy
GO:0010506 IDA regulation of autophagy
GO:0016579 IMP protein deubiquitination
GO:0030330 IMP DNA damage response, signal transduction by p53 class mediator
GO:0036459 IEA ubiquitinyl hydrolase activity
GO:0044325 IDA ion channel binding
GO:0044822 IDA poly(A) RNA binding
GO:0045111 IDA intermediate filament cytoskeleton

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000076116 usp10 ubiquitin specific peptidase 10 protein_coding Danio_rerio
ENSMUSG00000031826 Usp10 ubiquitin specific peptidase 10 protein_coding Mus_musculus

Loading