C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: lysine-rich nucleolar protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000103550 KNOP1 9606 - 16:19701934-19718235 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000219837 KNOP1-001 19701934-19718234 protein_coding
  ENST00000564480 KNOP1-002 19714799-19718131 protein_coding
  ENST00000565844 KNOP1-004 19710260-19718235 retained_intron
  ENST00000567367 KNOP1-003 19707165-19714577 protein_coding
  ENST00000568230 KNOP1-005 19706356-19712091 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonLiverOvaryPlacentaENST00000219837ENST00000565844
Transcript ID Breast Colon Liver Ovary Placenta
ENST00000219837 N/A 0.984±0.00 0.811±0.12 1.171±0.00 N/A
ENST00000565844 1.816±0.00 N/A N/A 15.568±0.00 13.291±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006MW CIL_0006MW_0001 CGP 16:19523811-19706793
CIL_00054B CIL_00054B_0001 CGP 16:19555240-19718235
CIL_0006MO CIL_0006MO_0001 CGP 16:19701934-19858467

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000077721 knop1 lysine-rich nucleolar protein 1 protein_coding Danio_rerio
ENSMUSG00000030980 Knop1 lysine rich nucleolar protein 1 protein_coding Mus_musculus

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