C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: lysine rich nucleolar protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000030980 Knop1 10090 - 7:118842222-118856254 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000033277 Knop1-001 118845760-118856254 protein_coding
  ENSMUST00000063607 Knop1-002 118842237-118856001 protein_coding
  ENSMUST00000106549 Knop1-004 118845501-118855602 protein_coding
  ENSMUST00000106550 Knop1-201 118842222-118855998 protein_coding
  ENSMUST00000116280 Knop1-202 118842222-118855998 protein_coding
  ENSMUST00000126792 Knop1-005 118843790-118855684 protein_coding
  ENSMUST00000152309 Knop1-003 118852763-118854289 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastHeartKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000033277ENSMUST00000063607ENSMUST00000106549ENSMUST00000106550ENSMUST00000116280
Transcript ID Adipose Bladder Brain Breast Heart Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000033277 N/A N/A N/A N/A N/A N/A N/A N/A 38.320±0.00 31.939±5.67 150.523±229.76
ENSMUST00000063607 9.293±0.16 N/A N/A N/A N/A N/A 4.147±1.37 N/A 8.372±0.00 4.656±0.00 N/A
ENSMUST00000106549 N/A N/A N/A N/A N/A N/A N/A N/A N/A 20.597±0.00 N/A
ENSMUST00000106550 N/A N/A N/A 6.446±0.00 3.125±0.26 6.819±0.34 N/A N/A 9.629±1.20 N/A N/A
ENSMUST00000116280 N/A 8.800±0.74 11.047±0.81 N/A N/A N/A 8.316±2.32 3.679±0.34 N/A 10.268±0.84 5.766±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006MW CIL_0006MW_0002 CGP 7:118712552-118842966
CIL_00054B CIL_00054B_0002 CGP 7:118740226-118856254
CIL_0006MO CIL_0006MO_0002 CGP 7:118842222-118972652

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000077721 knop1 lysine-rich nucleolar protein 1 protein_coding Danio_rerio
ENSG00000103550 KNOP1 lysine-rich nucleolar protein 1 protein_coding Homo_sapiens

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