C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: BRF2, RNA polymerase III transcription initiation factor 50 kDa subunit
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000104221 BRF2 9606 - 8:37843268-37849904 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000220659 BRF2-001 37843268-37849904 protein_coding
  ENST00000520601 BRF2-005 37844702-37849838 protein_coding
  ENST00000521170 BRF2-003 37846957-37849861 protein_coding
  ENST00000522539 BRF2-004 37847056-37849854 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000220659
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000220659 10.896±0.00 14.305±0.00 0.821±0.00 3.322±1.59 5.529±3.36 4.841±3.16 2.845±2.02 3.438±2.44 3.584±0.62 4.866±3.27 5.036±1.85 10.628±8.74 24.246±9.83 8.037±3.20

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000802 CIL_000802_0001 VISTA 8:37337791-37938686
CIL_0009C5 CIL_0009C5_0001 VISTA 8:37525567-38127835
CIL_0007QT CIL_0007QT_0001 VISTA 8:37525572-38127829
CIL_0002IW CIL_0002IW_0001 CGP 8:37762593-37844896
CIL_0002IX CIL_0002IX_0001 CGP 8:37784191-37849904
CIL_0003YX CIL_0003YX_0002 CGP 8:37843268-37899467

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005654 TAS nucleoplasm
GO:0006352 IEA DNA-templated transcription, initiation
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006383 TAS transcription from RNA polymerase III promoter
GO:0008270 IEA zinc ion binding
GO:0010467 TAS gene expression

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000002060 brf2 BRF2, subunit of RNA polymerase III transcription initiation factor, BRF1-like protein_coding Danio_rerio
ENSMUSG00000031487 Brf2 BRF2, subunit of RNA polymerase III transcription initiation factor, BRF1-like protein_coding Mus_musculus

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