C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

CIL_0003YX_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000002060-ENSDARG00000036462 CGP 7955 10:42654382-42717174
GeneTranscriptPositionBiotype
ENSDARG00000002060 (brf2)
BRF2, subunit of RNA polymerase III transcription initiation factor, BRF1-like
ENSDART00000020297 (brf2-201) 42654386-42667407 protein_coding
ENSDART00000141190 (brf2-001) 42654382-42659956 protein_coding
ENSDARG00000036462 (rab11fip1b)
RAB11 family interacting protein 1 (class I) b
ENSDART00000052971 (rab11fip1b-201) 42681454-42717174 protein_coding
ENSDART00000128156 (rab11fip1b-001) 42716719-42717174 protein_coding
CIL_0003YX_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000104221-ENSG00000156675 CGP 9606 8:37843268-37899467
GeneTranscriptPositionBiotype
ENSG00000104221 (BRF2)
BRF2, RNA polymerase III transcription initiation factor 50 kDa subunit
ENST00000220659 (BRF2-001) 37843268-37849904 protein_coding
ENST00000520601 (BRF2-005) 37844702-37849838 protein_coding
ENST00000521170 (BRF2-003) 37846957-37849861 protein_coding
ENST00000522539 (BRF2-004) 37847056-37849854 nonsense_mediated_decay
ENSG00000156675 (RAB11FIP1)
RAB11 family interacting protein 1 (class I)
ENST00000287263 (RAB11FIP1-001) 37858618-37899467 protein_coding
ENST00000330843 (RAB11FIP1-002) 37858949-37899454 protein_coding
ENST00000522727 (RAB11FIP1-008) 37862759-37899454 protein_coding
ENST00000522774 (RAB11FIP1-007) 37862895-37873278 retained_intron
ENST00000523182 (RAB11FIP1-003) 37862895-37873278 processed_transcript
ENST00000524118 (RAB11FIP1-006) 37870387-37878117 protein_coding
ENSG00000280064 (RP11-205M5.3)
ENST00000622942 (RP11-205M5.3-001) 37858949-37861333 TEC
CIL_0003YX_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000031487-ENSMUSG00000031488 CGP 10090 8:27123832-27174646
GeneTranscriptPositionBiotype
ENSMUSG00000031487 (Brf2)
BRF2, subunit of RNA polymerase III transcription initiation factor, BRF1-like
ENSMUST00000033877 (Brf2-201) 27123832-27128632 protein_coding
ENSMUSG00000031488 (Rab11fip1)
RAB11 family interacting protein 1 (class I)
ENSMUST00000033878 (Rab11fip1-201) 27138773-27174646 protein_coding
ENSMUST00000054212 (Rab11fip1-202) 27138773-27174646 protein_coding
ENSMUSG00000097262 (4933416M07Rik)
RIKEN cDNA 4933416M07 gene
ENSMUST00000181424 (4933416M07Rik-201) 27142910-27149671 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003YX_0001ENSDARG00000002060ENSDART00000020297ENSDART00000141190ENSDARG00000036462ENSDART00000052971ENSDART00000128156CIL_0003YX_0002ENSG00000104221ENST00000220659ENST00000520601ENST00000521170ENST00000522539ENSG00000156675ENST00000287263ENST00000330843ENST00000522727ENST00000522774ENST00000523182ENST00000524118ENSG00000280064ENST00000622942CIL_0003YX_0003ENSMUSG00000031487ENSMUST00000033877ENSMUSG00000031488ENSMUST00000033878ENSMUST00000054212ENSMUSG00000097262ENSMUST00000181424
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003YX_0001ENSDARG00000002060ENSDART00000020297ENSDART00000141190ENSDARG00000036462ENSDART00000052971ENSDART00000128156CIL_0003YX_0002ENSG00000104221ENST00000220659ENSG00000156675ENST00000287263ENST00000330843ENST00000522727ENST00000522774ENSG00000280064ENST00000622942CIL_0003YX_0003ENSMUSG00000031487ENSMUST00000033877ENSMUSG00000031488ENSMUST00000033878ENSMUST00000054212ENSMUSG00000097262ENSMUST00000181424
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000002060 ENSDART00000020297 N/A N/A N/A 0.476±0.29 N/A N/A 0.580±0.38 2.707±0.00 0.298±0.00 N/A 0.526±0.00 N/A N/A N/A
ENSDART00000141190 N/A N/A N/A 0.454±0.00 N/A N/A N/A 2.078±1.01 N/A N/A N/A N/A N/A N/A
ENSDARG00000036462 ENSDART00000052971 N/A N/A N/A 1.522±0.89 N/A N/A 2.908±0.00 N/A 1.347±0.00 N/A 2.565±0.00 N/A N/A N/A
ENSDART00000128156 N/A N/A N/A 0.450±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000104221 ENST00000220659 10.896±0.00 14.305±0.00 0.821±0.00 3.322±1.59 5.529±3.36 4.841±3.16 2.845±2.02 3.438±2.44 3.584±0.62 4.866±3.27 5.036±1.85 10.628±8.74 24.246±9.83 8.037±3.20
ENST00000520601 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000521170 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522539 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000156675 ENST00000287263 0.599±0.00 N/A 1.204±0.00 0.107±0.00 N/A 1.452±0.00 0.472±0.00 0.509±0.00 0.392±0.20 N/A 0.196±0.00 4.000±2.51 2.979±2.07 1.168±0.00
ENST00000330843 0.782±0.00 2.378±0.00 N/A 0.147±0.04 1.251±0.26 1.909±0.94 0.719±0.52 1.164±0.80 1.008±0.00 N/A N/A 4.370±2.65 2.399±0.11 0.887±0.00
ENST00000522727 2.339±0.00 N/A N/A 0.838±0.00 1.935±0.00 9.256±0.00 1.132±0.00 N/A 2.076±1.15 N/A 1.072±0.00 8.396±4.67 5.932±0.12 N/A
ENST00000522774 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.751±0.00 N/A N/A N/A
ENST00000523182 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000524118 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000280064 ENST00000622942 4.190±0.00 N/A 1.941±0.00 0.737±0.41 2.615±0.00 6.920±0.33 0.650±0.00 5.016±4.39 N/A 10.269±0.00 1.540±0.00 12.290±0.00 11.191±0.00 5.141±0.38
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000031487 ENSMUST00000033877 6.479±0.86 5.848±1.11 7.601±0.44 8.182±2.86 6.240±0.58 4.892±0.57 3.440±0.32 5.805±0.99 4.668±0.98 5.014±0.53 3.453±0.56 8.191±1.74 5.174±1.14 13.130±4.09
ENSMUSG00000031488 ENSMUST00000033878 0.612±0.47 1.636±0.39 3.908±0.11 0.147±0.04 1.256±0.54 11.824±1.28 0.166±0.06 2.307±0.33 0.854±0.34 11.539±0.72 0.029±0.02 2.056±0.95 2.175±1.03 1.419±0.61
ENSMUST00000054212 0.743±0.62 0.267±0.06 4.063±0.07 0.090±0.02 0.942±0.19 6.164±2.06 0.175±0.10 1.288±0.10 0.444±0.15 6.714±0.32 0.044±0.02 0.966±0.28 2.725±1.48 0.698±0.09
ENSMUSG00000097262 ENSMUST00000181424 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.227±1.67

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