C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RAB2A, member RAS oncogene family
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000104388 RAB2A 9606 + 8:60516857-60623627 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000262646 RAB2A-001 60516857-60623627 protein_coding
  ENST00000396696 RAB2A-003 60591690-60620938 retained_intron
  ENST00000429861 RAB2A-004 60517236-60592117 retained_intron
  ENST00000452437 RAB2A-002 60584723-60619111 protein_coding
  ENST00000466595 RAB2A-006 60517224-60620948 nonsense_mediated_decay
  ENST00000481569 RAB2A-005 60517176-60559279 retained_intron
  ENST00000525529 RAB2A-010 60569929-60591937 retained_intron
  ENST00000529579 RAB2A-011 60517181-60620895 protein_coding
  ENST00000530071 RAB2A-012 60584044-60620941 processed_transcript
  ENST00000531098 RAB2A-008 60558408-60572095 protein_coding
  ENST00000531289 RAB2A-007 60516936-60620988 protein_coding
  ENST00000534260 RAB2A-009 60558852-60584806 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000262646ENST00000429861ENST00000466595ENST00000525529ENST00000529579ENST00000530071ENST00000531289
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000262646 N/A 2.780±0.00 2.888±0.00 9.228±4.06 7.411±1.70 5.589±0.00 3.162±0.00 4.158±0.00 6.645±0.00 4.284±1.41 2.801±0.00 7.905±3.94 13.390±8.48 13.275±6.04
ENST00000429861 N/A N/A N/A N/A N/A N/A N/A 7.360±0.00 8.942±0.00 N/A 6.004±0.00 45.273±0.00 111.676±0.00 34.257±0.00
ENST00000466595 N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.031±0.00 N/A N/A N/A N/A
ENST00000525529 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 63.789±0.00
ENST00000529579 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 20.157±0.00 N/A
ENST00000530071 N/A N/A N/A N/A N/A N/A 4.131±0.00 N/A N/A N/A N/A N/A 25.930±0.00 24.500±0.00
ENST00000531289 40.438±0.00 16.634±0.00 3.753±0.00 32.471±0.00 29.142±0.00 13.979±8.82 N/A 4.036±0.00 4.701±0.00 23.893±0.00 40.845±0.00 14.239±7.63 20.531±4.95 24.165±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003G7 CIL_0003G7_0001 CGP 8:60187347-60623627
CIL_000379 CIL_000379_0001 CGP 8:60516857-60868028

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000139 TAS Golgi membrane
GO:0000278 TAS mitotic cell cycle
GO:0003924 IDA:IEA GTPase activity
GO:0005515 IPI protein binding
GO:0005525 IDA:IEA GTP binding
GO:0005622 IEA intracellular
GO:0005634 IDA:IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005765 IDA lysosomal membrane
GO:0005783 IEA endoplasmic reticulum
GO:0005794 IEA Golgi apparatus
GO:0006184 IDA:IEA GTP catabolic process
GO:0006886 IEA intracellular protein transport
GO:0006913 IEA nucleocytoplasmic transport
GO:0007030 IMP Golgi organization
GO:0007165 IEA signal transduction
GO:0007264 IEA small GTPase mediated signal transduction
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0019003 IDA GDP binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000020261 rab2a RAB2A, member RAS oncogene family protein_coding Danio_rerio
ENSMUSG00000047187 Rab2a RAB2A, member RAS oncogene family protein_coding Mus_musculus

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