C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003G7_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000178538-ENSG00000104388 CGP 9606 8:60187347-60623627
GeneTranscriptPositionBiotype
ENSG00000104388 (RAB2A)
RAB2A, member RAS oncogene family 		ENST00000262646 (RAB2A-001) 60516857-60623627 protein_coding
ENST00000396696 (RAB2A-003) 60591690-60620938 retained_intron
ENST00000429861 (RAB2A-004) 60517236-60592117 retained_intron
ENST00000452437 (RAB2A-002) 60584723-60619111 protein_coding
ENST00000466595 (RAB2A-006) 60517224-60620948 nonsense_mediated_decay
ENST00000481569 (RAB2A-005) 60517176-60559279 retained_intron
ENST00000525529 (RAB2A-010) 60569929-60591937 retained_intron
ENST00000529579 (RAB2A-011) 60517181-60620895 protein_coding
ENST00000530071 (RAB2A-012) 60584044-60620941 processed_transcript
ENST00000531098 (RAB2A-008) 60558408-60572095 protein_coding
ENST00000531289 (RAB2A-007) 60516936-60620988 protein_coding
ENST00000534260 (RAB2A-009) 60558852-60584806 nonsense_mediated_decay
ENSG00000178538 (CA8)
carbonic anhydrase VIII 		ENST00000317995 (CA8-001) 60187347-60281412 protein_coding
ENST00000524872 (CA8-003) 60208071-60281385 retained_intron
ENST00000528666 (CA8-004) 60222649-60232673 processed_transcript
ENST00000529918 (CA8-002) 60264822-60281324 retained_intron
ENSG00000226301 (PDCL3P1)
phosducin-like 3 pseudogene 1 		ENST00000534575 (PDCL3P1-001) 60387262-60387995 processed_pseudogene
ENSG00000251396 (LINC01301)
long intergenic non-protein coding RNA 1301 		ENST00000476425 (LINC01301-005) 60405011-60508759 lincRNA
ENST00000506428 (LINC01301-001) 60403212-60413818 lincRNA
ENST00000530033 (LINC01301-002) 60413010-60413652 lincRNA
ENST00000530725 (LINC01301-006) 60384588-60516780 lincRNA
ENST00000531654 (LINC01301-003) 60404679-60413930 lincRNA
ENST00000532232 (LINC01301-007) 60468863-60516795 lincRNA
ENST00000534117 (LINC01301-004) 60412340-60413254 lincRNA
ENSG00000255321 (RP11-91I20.4)
 ENST00000531379 (RP11-91I20.4-001) 60551957-60553036 antisense
CIL_0003G7_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000041261-ENSMUSG00000047187 CGP 10090 4:8143362-8607778
GeneTranscriptPositionBiotype
ENSMUSG00000041261 (Car8)
carbonic anhydrase 8 		ENSMUST00000066674 (Car8-001) 8143362-8239041 protein_coding
ENSMUSG00000047187 (Rab2a)
RAB2A, member RAS oncogene family 		ENSMUST00000060232 (Rab2a-001) 8535644-8607778 protein_coding
ENSMUSG00000079993 (Gm11799)
predicted gene 11799 		ENSMUST00000116110 (Gm11799-001) 8166894-8167353 processed_pseudogene
ENSMUSG00000082151 (Gm11810)
predicted gene 11810 		ENSMUST00000118311 (Gm11810-001) 8456166-8456498 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003G7_0001ENSG00000104388ENST00000262646ENST00000396696ENST00000429861ENST00000452437ENST00000466595ENST00000481569ENST00000525529ENST00000529579ENST00000530071ENST00000531098ENST00000531289ENST00000534260ENSG00000178538ENST00000317995ENST00000524872ENST00000528666ENST00000529918ENSG00000226301ENST00000534575ENSG00000251396ENST00000476425ENST00000506428ENST00000530033ENST00000530725ENST00000531654ENST00000532232ENST00000534117ENSG00000255321ENST00000531379CIL_0003G7_0002ENSMUSG00000041261ENSMUST00000066674ENSMUSG00000047187ENSMUST00000060232ENSMUSG00000079993ENSMUST00000116110ENSMUSG00000082151ENSMUST00000118311
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003G7_0001ENSG00000104388ENST00000262646ENST00000429861ENST00000466595ENST00000525529ENST00000529579ENST00000530071ENST00000531289ENSG00000178538ENST00000317995ENST00000524872ENST00000528666ENST00000529918ENSG00000226301ENST00000534575ENSG00000251396ENST00000476425ENST00000506428ENST00000530725ENST00000531654ENST00000532232ENST00000534117ENSG00000255321ENST00000531379CIL_0003G7_0002ENSMUSG00000041261ENSMUST00000066674ENSMUSG00000047187ENSMUST00000060232ENSMUSG00000079993ENSMUST00000116110ENSMUSG00000082151ENSMUST00000118311
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000104388 ENST00000262646 N/A 2.780±0.00 2.888±0.00 9.228±4.06 7.411±1.70 5.589±0.00 3.162±0.00 4.158±0.00 6.645±0.00 4.284±1.41 2.801±0.00 7.905±3.94 13.390±8.48 13.275±6.04
ENST00000396696 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000429861 N/A N/A N/A N/A N/A N/A N/A 7.360±0.00 8.942±0.00 N/A 6.004±0.00 45.273±0.00 111.676±0.00 34.257±0.00
ENST00000452437 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000466595 N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.031±0.00 N/A N/A N/A N/A
ENST00000481569 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000525529 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 63.789±0.00
ENST00000529579 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 20.157±0.00 N/A
ENST00000530071 N/A N/A N/A N/A N/A N/A 4.131±0.00 N/A N/A N/A N/A N/A 25.930±0.00 24.500±0.00
ENST00000531098 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000531289 40.438±0.00 16.634±0.00 3.753±0.00 32.471±0.00 29.142±0.00 13.979±8.82 N/A 4.036±0.00 4.701±0.00 23.893±0.00 40.845±0.00 14.239±7.63 20.531±4.95 24.165±0.00
ENST00000534260 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000178538 ENST00000317995 0.773±0.00 0.210±0.00 N/A 1.230±0.10 0.595±0.00 1.437±0.00 0.518±0.14 2.873±0.00 N/A 1.092±0.86 0.365±0.00 0.364±0.25 2.677±1.28 1.632±0.48
ENST00000524872 0.316±0.00 0.268±0.00 0.873±0.00 1.975±0.87 0.548±0.00 0.342±0.00 0.249±0.12 N/A 0.308±0.00 1.095±0.46 N/A 0.532±0.00 2.141±1.34 1.362±0.00
ENST00000528666 N/A N/A N/A N/A N/A N/A N/A N/A 0.047±0.00 N/A N/A 1.850±0.00 N/A N/A
ENST00000529918 N/A N/A N/A N/A 0.941±0.00 0.257±0.00 0.224±0.00 N/A N/A N/A 0.958±0.00 N/A N/A N/A
ENSG00000226301 ENST00000534575 N/A N/A N/A N/A 0.047±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.019±0.00
ENSG00000251396 ENST00000476425 0.303±0.00 0.424±0.00 N/A 1.171±0.00 N/A N/A N/A 0.195±0.00 0.315±0.24 0.287±0.00 N/A N/A 0.154±0.00 0.913±0.02
ENST00000506428 0.078±0.00 N/A 0.131±0.00 0.340±0.00 0.298±0.24 N/A 0.024±0.00 0.037±0.00 0.043±0.00 N/A N/A 0.061±0.03 0.089±0.04 0.126±0.00
ENST00000530033 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000530725 N/A 0.138±0.00 N/A N/A 0.722±0.00 N/A N/A N/A N/A 0.124±0.00 N/A N/A N/A N/A
ENST00000531654 N/A N/A N/A N/A N/A 0.045±0.00 N/A 0.165±0.00 N/A N/A N/A 0.243±0.00 0.052±0.00 N/A
ENST00000532232 0.382±0.00 0.070±0.00 N/A N/A N/A N/A 0.160±0.00 0.281±0.00 N/A N/A 0.223±0.00 N/A 0.232±0.00 1.369±0.00
ENST00000534117 N/A N/A 0.808±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000255321 ENST00000531379 0.124±0.00 0.142±0.00 0.565±0.00 0.136±0.10 0.085±0.00 0.790±0.73 0.048±0.00 0.066±0.03 0.159±0.13 0.020±0.00 N/A 0.355±0.43 0.045±0.00 0.086±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000041261 ENSMUST00000066674 0.565±0.32 4.013±0.70 0.377±0.11 0.541±0.07 1.021±0.41 4.481±1.43 2.579±0.32 1.362±0.07 7.015±5.31 14.218±1.69 1.129±0.17 0.173±0.07 0.179±0.06 0.089±0.05
ENSMUSG00000047187 ENSMUST00000060232 50.604±10.57 314.941±56.40 64.702±2.42 77.052±18.86 87.212±59.23 137.305±22.87 44.548±2.62 55.886±8.16 31.464±7.41 98.821±30.57 82.636±8.23 123.567±50.15 48.567±15.03 29.278±9.25
ENSMUSG00000079993 ENSMUST00000116110 N/A 0.634±0.38 0.051±0.00 0.097±0.00 0.294±0.00 0.857±0.01 0.120±0.00 0.179±0.05 0.267±0.28 0.735±0.33 0.078±0.00 N/A N/A N/A
ENSMUSG00000082151 ENSMUST00000118311 N/A N/A N/A 0.203±0.00 N/A N/A N/A N/A 0.042±0.00 N/A 0.113±0.00 0.356±0.15 0.239±0.00 0.196±0.00

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