C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: sorting nexin 16
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000104497 SNX16 9606 - 8:81799581-81842866 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000345957 SNX16-001 81800958-81842304 protein_coding
  ENST00000353788 SNX16-002 81799581-81842193 protein_coding
  ENST00000396330 SNX16-201 81799587-81842286 protein_coding
  ENST00000518183 SNX16-005 81839734-81842217 protein_coding
  ENST00000519119 SNX16-004 81839681-81842302 protein_coding
  ENST00000519212 SNX16-009 81814645-81823850 retained_intron
  ENST00000519817 SNX16-011 81839710-81841958 protein_coding
  ENST00000520618 SNX16-012 81803116-81842206 protein_coding
  ENST00000521773 SNX16-010 81839878-81842054 protein_coding
  ENST00000521810 SNX16-003 81823792-81842866 protein_coding
  ENST00000523757 SNX16-006 81823792-81842183 protein_coding
  ENST00000615066 SNX16-202 81800723-81840213 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000345957ENST00000353788ENST00000396330ENST00000523757ENST00000615066
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000345957 0.573±0.00 N/A N/A N/A 1.200±0.00 0.852±0.00 0.591±0.10 1.218±0.00 0.619±0.11 0.622±0.00 N/A 3.128±0.00 1.021±0.00 5.725±4.40
ENST00000353788 N/A 0.729±0.00 N/A 0.510±0.00 0.804±0.08 0.769±0.51 0.195±0.01 0.339±0.00 N/A 0.321±0.00 0.230±0.00 0.585±0.21 0.155±0.00 1.363±0.67
ENST00000396330 N/A N/A 0.118±0.00 N/A N/A N/A 0.182±0.00 N/A N/A N/A N/A 0.413±0.00 N/A 0.837±0.00
ENST00000523757 1.975±0.00 N/A 0.134±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000615066 N/A N/A N/A N/A 0.387±0.00 0.241±0.00 N/A 0.858±0.00 0.959±0.00 N/A 0.354±0.00 1.471±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00071W CIL_00071W_0001 CGP 8:81732434-81842866

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005764 IEA lysosome
GO:0005769 IDA early endosome
GO:0005770 IDA late endosome
GO:0006622 IMP protein targeting to lysosome
GO:0008333 IMP endosome to lysosome transport
GO:0031313 IDA extrinsic component of endosome membrane
GO:0035091 IEA:IDA phosphatidylinositol binding
GO:0042802 IPI identical protein binding
GO:0045022 IMP early endosome to late endosome transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000046072 snx16 sorting nexin 16 protein_coding Danio_rerio
ENSMUSG00000027534 Snx16 sorting nexin 16 protein_coding Mus_musculus

Loading