C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sorting nexin 16
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000345957 SNX16-001 ENSG00000104497 9606 - 8:81800958-81842304 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000345957
Transcript ID Adipose Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000345957 0.573±0.00 1.200±0.00 0.852±0.00 0.591±0.10 1.218±0.00 0.619±0.11 0.622±0.00 3.128±0.00 1.021±0.00 5.725±4.40

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00071W CIL_00071W_0001 CGP 8:81732434-81842866

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005764 IEA lysosome
GO:0005769 IDA early endosome
GO:0005770 IDA late endosome
GO:0006622 IMP protein targeting to lysosome
GO:0008333 IMP endosome to lysosome transport
GO:0031313 IDA extrinsic component of endosome membrane
GO:0035091 IEA:IDA phosphatidylinositol binding
GO:0042802 IPI identical protein binding
GO:0045022 IMP early endosome to late endosome transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000029047 Snx16-201 protein_coding Mus_musculus 0 1182
ENSMUST00000099223 Snx16-202 protein_coding Mus_musculus 0 1016

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