C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sorting nexin 16
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000353788 SNX16-002 ENSG00000104497 9606 - 8:81799581-81842193 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartKidneyLungMuscleOvaryPlacentaTestisENST00000353788
Transcript ID Adrenal Brain Breast Colon Heart Kidney Lung Muscle Ovary Placenta Testis
ENST00000353788 0.729±0.00 0.510±0.00 0.804±0.08 0.769±0.51 0.195±0.01 0.339±0.00 0.321±0.00 0.230±0.00 0.585±0.21 0.155±0.00 1.363±0.67

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00071W CIL_00071W_0001 CGP 8:81732434-81842866

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005764 IEA lysosome
GO:0005769 IDA early endosome
GO:0005770 IDA late endosome
GO:0006622 IMP protein targeting to lysosome
GO:0008333 IMP endosome to lysosome transport
GO:0031313 IDA extrinsic component of endosome membrane
GO:0035091 IDA:IEA phosphatidylinositol binding
GO:0042802 IPI identical protein binding
GO:0045022 IMP early endosome to late endosome transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000029047 Snx16-201 protein_coding Mus_musculus 0 627
ENSMUST00000099223 Snx16-202 protein_coding Mus_musculus 0 460

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