C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: sorting nexin 16
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000027534 Snx16 10090 - 3:10417819-10440124 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000029047 Snx16-201 10417819-10440124 protein_coding
  ENSMUST00000099223 Snx16-202 10417819-10440124 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000029047ENSMUST00000099223
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000029047 1.281±0.53 1.203±0.39 2.161±0.31 5.344±1.88 0.717±0.50 0.812±0.31 0.750±0.11 0.990±0.19 0.770±0.37 0.926±0.35 1.142±0.31 1.348±0.42 1.412±0.44 0.416±0.15
ENSMUST00000099223 0.352±0.18 2.366±0.74 0.444±0.11 1.676±0.24 0.398±0.13 0.426±0.08 0.177±0.05 0.458±0.19 0.227±0.12 0.411±0.00 N/A 0.643±0.65 0.475±0.13 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00071W CIL_00071W_0002 CGP 3:10366907-10440124

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005764 IEA lysosome
GO:0005769 ISS early endosome
GO:0005770 ISS late endosome
GO:0006622 ISS protein targeting to lysosome
GO:0008333 ISS endosome to lysosome transport
GO:0031313 ISS extrinsic component of endosome membrane
GO:0035091 ISS phosphatidylinositol binding
GO:0042802 IEA identical protein binding
GO:0045022 ISS early endosome to late endosome transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000046072 snx16 sorting nexin 16 protein_coding Danio_rerio
ENSG00000104497 SNX16 sorting nexin 16 protein_coding Homo_sapiens

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