C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: kelch domain containing 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000104731 KLHDC4 9606 - 16:87696485-87765992 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000270583 KLHDC4-001 87707813-87765949 protein_coding
  ENST00000316853 KLHDC4-008 87707812-87750942 processed_transcript
  ENST00000347925 KLHDC4-004 87707812-87765976 protein_coding
  ENST00000353170 KLHDC4-002 87707812-87765899 protein_coding
  ENST00000446344 KLHDC4-201 87701639-87702514 protein_coding
  ENST00000561825 KLHDC4-015 87748799-87765931 protein_coding
  ENST00000562155 KLHDC4-003 87707840-87765929 nonsense_mediated_decay
  ENST00000562261 KLHDC4-019 87709438-87765951 protein_coding
  ENST00000562872 KLHDC4-023 87726821-87731006 retained_intron
  ENST00000562913 KLHDC4-024 87710798-87726917 retained_intron
  ENST00000563845 KLHDC4-014 87761958-87765961 nonsense_mediated_decay
  ENST00000564396 KLHDC4-018 87730636-87765961 nonsense_mediated_decay
  ENST00000564484 KLHDC4-020 87726899-87765933 processed_transcript
  ENST00000565328 KLHDC4-021 87729318-87762154 processed_transcript
  ENST00000566349 KLHDC4-009 87707813-87743044 processed_transcript
  ENST00000566561 KLHDC4-013 87763485-87765961 nonsense_mediated_decay
  ENST00000566661 KLHDC4-007 87709463-87762016 retained_intron
  ENST00000567298 KLHDC4-005 87698149-87765972 nonsense_mediated_decay
  ENST00000567513 KLHDC4-022 87711236-87740964 processed_transcript
  ENST00000568338 KLHDC4-012 87755198-87765992 nonsense_mediated_decay
  ENST00000568346 KLHDC4-026 87700778-87701724 processed_transcript
  ENST00000568444 KLHDC4-027 87696485-87699415 processed_transcript
  ENST00000568499 KLHDC4-025 87703026-87708387 processed_transcript
  ENST00000568502 KLHDC4-016 87748738-87765964 processed_transcript
  ENST00000569487 KLHDC4-010 87707816-87710877 retained_intron
  ENST00000569747 KLHDC4-017 87730607-87765967 nonsense_mediated_decay
  ENST00000622456 KLHDC4-202 87707914-87765992 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000270583ENST00000347925ENST00000353170ENST00000562155ENST00000562261ENST00000562913ENST00000566349ENST00000566661ENST00000567298ENST00000567513ENST00000568338ENST00000569747ENST00000622456
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000270583 1.813±0.00 N/A 1.109±0.00 N/A 2.614±0.95 0.207±0.00 1.582±0.66 1.480±0.00 N/A N/A 4.968±0.97 2.768±1.07 N/A
ENST00000347925 3.675±0.00 N/A N/A N/A N/A 0.111±0.00 N/A N/A N/A N/A 4.441±0.00 1.003±0.00 N/A
ENST00000353170 N/A N/A N/A N/A N/A N/A 2.164±0.00 N/A N/A N/A N/A N/A N/A
ENST00000562155 N/A N/A N/A 5.556±0.00 1.825±0.00 N/A N/A 1.349±0.00 3.710±0.00 N/A N/A N/A N/A
ENST00000562261 N/A N/A N/A N/A N/A 0.233±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000562913 N/A N/A N/A N/A N/A N/A N/A 2.586±0.00 N/A N/A N/A N/A N/A
ENST00000566349 N/A 10.898±0.00 0.809±0.00 7.248±0.00 N/A 1.566±0.00 3.411±0.00 1.416±0.00 N/A 2.885±1.78 5.632±1.68 3.853±1.33 11.089±1.16
ENST00000566661 N/A N/A N/A N/A 0.964±0.00 N/A N/A N/A 0.312±0.00 N/A 0.681±0.00 N/A N/A
ENST00000567298 N/A 3.442±0.00 N/A N/A N/A N/A N/A 0.401±0.00 N/A N/A N/A 0.639±0.08 4.042±0.00
ENST00000567513 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.191±0.00 N/A N/A N/A
ENST00000568338 N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.603±0.00 N/A N/A N/A
ENST00000569747 N/A N/A N/A N/A N/A 0.432±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000622456 N/A N/A N/A N/A N/A N/A N/A 1.089±0.00 N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008WG CIL_0008WG_0001 VISTA 16:87215497-87815964
CIL_00070Q CIL_00070Q_0001 CGP 16:87406246-87698156
CIL_0002SZ CIL_0002SZ_0001 CGP 16:87601835-87765992
CIL_0002T0 CIL_0002T0_0001 CGP 16:87696485-87869488

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI:IEA protein binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000017730 klhdc4 kelch domain containing 4 protein_coding Danio_rerio
ENSMUSG00000040263 Klhdc4 kelch domain containing 4 protein_coding Mus_musculus

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