C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: small nuclear ribonucleoprotein 70kDa (U1)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000104852 SNRNP70 9606 + 19:49085419-49108605 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000221448 SNRNP70-003 49085451-49108563 protein_coding
  ENST00000401730 SNRNP70-004 49085451-49108603 nonsense_mediated_decay
  ENST00000544278 SNRNP70-006 49102411-49108602 retained_intron
  ENST00000595231 SNRNP70-005 49085495-49108605 nonsense_mediated_decay
  ENST00000597936 SNRNP70-008 49085451-49090639 retained_intron
  ENST00000598441 SNRNP70-001 49085423-49108479 protein_coding
  ENST00000598984 SNRNP70-007 49085423-49102118 protein_coding
  ENST00000599687 SNRNP70-010 49086524-49101668 retained_intron
  ENST00000601065 SNRNP70-002 49085419-49108598 nonsense_mediated_decay
  ENST00000601411 SNRNP70-009 49086480-49098459 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000221448ENST00000401730ENST00000544278ENST00000595231ENST00000597936ENST00000598441ENST00000598984ENST00000599687ENST00000601065
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000221448 40.633±0.00 68.555±0.00 N/A 23.941±20.09 30.255±0.00 38.067±0.00 16.873±0.00 21.326±18.71 12.054±0.00 50.793±0.00 11.057±0.00 49.671±27.44 54.918±38.29 35.427±17.66
ENST00000401730 N/A 12.748±0.00 N/A N/A 3.794±2.22 N/A 1.048±0.00 1.739±0.00 1.777±0.00 N/A 3.193±0.00 11.951±7.64 N/A N/A
ENST00000544278 7.593±0.00 39.785±0.00 N/A 13.633±0.00 18.703±0.00 7.039±0.00 2.749±0.00 22.673±0.00 5.622±0.00 N/A 1.147±0.00 28.534±12.12 6.634±0.00 11.855±4.58
ENST00000595231 N/A N/A 1.474±0.00 N/A 1.906±0.00 2.557±0.00 0.529±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000597936 N/A N/A 5.076±0.00 N/A 5.679±0.00 N/A 1.588±0.00 N/A N/A N/A 7.651±0.00 6.534±0.00 N/A N/A
ENST00000598441 26.053±0.00 N/A 2.443±0.00 36.529±0.00 15.953±10.34 15.601±12.69 8.981±8.18 39.826±0.00 11.257±7.48 85.315±0.00 22.607±0.00 26.308±19.65 31.828±0.00 25.752±1.72
ENST00000598984 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 18.463±0.00 22.520±0.00 N/A
ENST00000599687 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 18.823±0.00 N/A N/A
ENST00000601065 N/A N/A N/A N/A N/A N/A N/A N/A N/A 23.537±0.00 6.977±0.00 N/A 16.105±0.00 11.833±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003AS CIL_0003AS_0002 CGP 19:49085419-49118460

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000398 IDA mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0003723 IMP RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005681 IDA spliceosomal complex
GO:0005685 IDA U1 snRNP
GO:0006397 TAS mRNA processing
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0043484 IMP regulation of RNA splicing
GO:0044822 IDA poly(A) RNA binding
GO:0048026 IEA positive regulation of mRNA splicing, via spliceosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000077126 snrnp70 small nuclear ribonucleoprotein 70 (U1) protein_coding Danio_rerio
ENSMUSG00000063511 Snrnp70 small nuclear ribonucleoprotein 70 (U1) protein_coding Mus_musculus

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