C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: small nuclear ribonucleoprotein 70kDa (U1)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000401730 SNRNP70-004 ENSG00000104852 9606 + 19:49085451-49108603 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastHeartKidneyLiverMuscleOvaryENST00000401730
Transcript ID Adrenal Breast Heart Kidney Liver Muscle Ovary
ENST00000401730 12.748±0.00 3.794±2.22 1.048±0.00 1.739±0.00 1.777±0.00 3.193±0.00 11.951±7.64

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003AS CIL_0003AS_0002 CGP 19:49085419-49118460

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000398 IDA mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0003723 IMP RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005681 IDA spliceosomal complex
GO:0005685 IDA U1 snRNP
GO:0006397 TAS mRNA processing
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0043484 IMP regulation of RNA splicing
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000074575 Snrnp70-201 protein_coding Mus_musculus 0 664

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