C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: small nuclear ribonucleoprotein 70kDa (U1)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000221448 SNRNP70-003 ENSG00000104852 9606 + 19:49085451-49108563 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000221448
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000221448 40.633±0.00 68.555±0.00 23.941±20.09 30.255±0.00 38.067±0.00 16.873±0.00 21.326±18.71 12.054±0.00 50.793±0.00 11.057±0.00 49.671±27.44 54.918±38.29 35.427±17.66

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003AS CIL_0003AS_0002 CGP 19:49085419-49118460

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000398 IDA mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0003723 IMP RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005681 IDA spliceosomal complex
GO:0005685 IDA U1 snRNP
GO:0006397 TAS mRNA processing
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0043484 IMP regulation of RNA splicing
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000074575 Snrnp70-201 protein_coding Mus_musculus 0 1046

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