C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ribosomal protein L18a
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000105640 RPL18A 9606 + 19:17859876-17864153 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000222247 RPL18A-001 17859876-17863316 protein_coding
  ENST00000597648 RPL18A-007 17860125-17863243 protein_coding
  ENST00000599870 RPL18A-005 17860763-17863304 protein_coding
  ENST00000599898 RPL18A-008 17859932-17863315 protein_coding
  ENST00000600147 RPL18A-002 17859921-17864153 protein_coding
  ENST00000600238 RPL18A-009 17861333-17862907 retained_intron
  ENST00000602216 RPL18A-006 17859953-17862177 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000222247ENST00000597648ENST00000599898
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000222247 126.572±0.00 N/A 4.955±0.00 14.001±0.00 10.940±0.00 21.350±0.00 22.087±16.40 37.910±28.12 34.457±14.97 113.245±96.37 102.879±63.82 557.344±485.47 688.038±138.39 67.245±0.00
ENST00000597648 N/A N/A 1.313±0.00 N/A N/A 7.900±0.00 3.093±0.00 N/A 9.334±0.00 7.132±0.00 N/A N/A N/A N/A
ENST00000599898 1210.390±0.00 1021.520±0.00 5.195±0.00 149.454±109.90 504.984±437.03 762.774±713.99 59.855±46.22 187.676±118.95 117.993±79.11 337.577±303.73 271.946±155.38 524.276±567.17 736.458±531.82 346.424±332.21

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003723 TAS RNA binding
GO:0003735 IEA:NAS structural constituent of ribosome
GO:0005829 TAS cytosol
GO:0005840 IEA ribosome
GO:0006412 IEA:NAS translation
GO:0006413 TAS translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0022625 IDA cytosolic large ribosomal subunit
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000025073 rpl18a ribosomal protein L18a protein_coding Danio_rerio
ENSMUSG00000045128 Rpl18a ribosomal protein L18A protein_coding Mus_musculus

Loading