C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L18a
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000599898 RPL18A-008 ENSG00000105640 9606 + 19:17859932-17863315 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000599898
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000599898 1210.390±0.00 1021.520±0.00 5.195±0.00 149.454±109.90 504.984±437.03 762.774±713.99 59.855±46.22 187.676±118.95 117.993±79.11 337.577±303.73 271.946±155.38 524.276±567.17 736.458±531.82 346.424±332.21

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003735 IEA structural constituent of ribosome
GO:0005840 IEA ribosome
GO:0006412 IEA translation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000054220 Rpl18a-201 protein_coding Mus_musculus 0 488
ENSMUST00000117288 Gm15427-001 processed_pseudogene Mus_musculus 0 477
ENSMUST00000161190 Rpl18a-ps1-001 processed_pseudogene Mus_musculus 0 462
ENSMUST00000121555 Rpl18-ps1-001 processed_pseudogene Mus_musculus 0 460
ENSMUST00000080062 Gm17541-201 protein_coding Mus_musculus 0 424
ENSDART00000030215 rpl18a-001 protein_coding Danio_rerio 0 344
ENSDART00000148933 rpl18a-002 nonsense_mediated_decay Danio_rerio 0 313
ENSMUST00000172625 Gm18128-001 processed_pseudogene Mus_musculus 0 230
ENSMUST00000178437 Gm9002-001 processed_pseudogene Mus_musculus 0 211

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