C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L18a
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000597648 RPL18A-007 ENSG00000105640 9606 + 19:17860125-17863243 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderColonHeartLiverLungENST00000597648
Transcript ID Bladder Colon Heart Liver Lung
ENST00000597648 1.313±0.00 7.900±0.00 3.093±0.00 9.334±0.00 7.132±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003735 IEA structural constituent of ribosome
GO:0005840 IEA ribosome
GO:0006412 IEA translation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000054220 Rpl18a-201 protein_coding Mus_musculus 0 588
ENSMUST00000117288 Gm15427-001 processed_pseudogene Mus_musculus 0 577
ENSMUST00000121555 Rpl18-ps1-001 processed_pseudogene Mus_musculus 0 571
ENSMUST00000161190 Rpl18a-ps1-001 processed_pseudogene Mus_musculus 0 568
ENSDART00000030215 rpl18a-001 protein_coding Danio_rerio 0 379
ENSDART00000148933 rpl18a-002 nonsense_mediated_decay Danio_rerio 0 300
ENSMUST00000178437 Gm9002-001 processed_pseudogene Mus_musculus 0 217

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