C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L18a
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000222247 RPL18A-001 ENSG00000105640 9606 + 19:17859876-17863316 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000222247
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000222247 126.572±0.00 4.955±0.00 14.001±0.00 10.940±0.00 21.350±0.00 22.087±16.40 37.910±28.12 34.457±14.97 113.245±96.37 102.879±63.82 557.344±485.47 688.038±138.39 67.245±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003723 TAS RNA binding
GO:0003735 IEA:NAS structural constituent of ribosome
GO:0005829 TAS cytosol
GO:0005840 IEA ribosome
GO:0006412 IEA:NAS translation
GO:0006413 TAS translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0022625 IDA cytosolic large ribosomal subunit
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000054220 Rpl18a-201 protein_coding Mus_musculus 0 688
ENSMUST00000117288 Gm15427-001 processed_pseudogene Mus_musculus 0 643
ENSMUST00000121555 Rpl18-ps1-001 processed_pseudogene Mus_musculus 0 627
ENSMUST00000161190 Rpl18a-ps1-001 processed_pseudogene Mus_musculus 0 612
ENSMUST00000080062 Gm17541-201 protein_coding Mus_musculus 0 544
ENSDART00000030215 rpl18a-001 protein_coding Danio_rerio 0 401
ENSMUST00000172625 Gm18128-001 processed_pseudogene Mus_musculus 0 326
ENSDART00000148933 rpl18a-002 nonsense_mediated_decay Danio_rerio 0 313
ENSMUST00000178437 Gm9002-001 processed_pseudogene Mus_musculus 0 228

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