C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SMG9 nonsense mediated mRNA decay factor
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000105771 SMG9 9606 - 19:43727992-43754990 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000270066 SMG9-001 43727992-43754990 protein_coding
  ENST00000594081 SMG9-012 43733344-43734079 retained_intron
  ENST00000595700 SMG9-003 43737850-43754867 retained_intron
  ENST00000596714 SMG9-007 43747777-43754601 protein_coding
  ENST00000597586 SMG9-008 43747655-43754598 protein_coding
  ENST00000597598 SMG9-004 43734460-43747734 nonsense_mediated_decay
  ENST00000598860 SMG9-011 43733424-43734825 retained_intron
  ENST00000598886 SMG9-010 43747797-43754922 retained_intron
  ENST00000599804 SMG9-009 43747762-43754634 protein_coding
  ENST00000600097 SMG9-013 43731390-43733110 retained_intron
  ENST00000601170 SMG9-002 43732270-43754962 protein_coding
  ENST00000601925 SMG9-006 43747677-43754627 protein_coding
  ENST00000602222 SMG9-005 43747479-43754634 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000270066ENST00000595700ENST00000597598ENST00000598860ENST00000598886ENST00000600097ENST00000601170ENST00000602222
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000270066 0.367±0.00 2.051±0.00 N/A N/A 0.748±0.00 0.285±0.00 0.177±0.00 0.293±0.09 N/A 0.922±0.00 N/A 0.834±0.29 1.170±0.25 2.272±0.00
ENST00000595700 1.229±0.00 N/A N/A 3.771±0.00 N/A 0.816±0.00 0.632±0.00 N/A 1.360±0.00 3.206±0.00 N/A 2.332±0.00 2.826±0.00 N/A
ENST00000597598 N/A N/A N/A N/A N/A N/A N/A 2.513±0.00 N/A N/A N/A N/A N/A N/A
ENST00000598860 N/A 5.825±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.951±0.00 N/A N/A
ENST00000598886 N/A N/A N/A N/A N/A N/A 0.189±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000600097 3.921±0.00 N/A 1.694±0.00 3.544±0.00 8.805±0.00 8.922±2.08 2.484±0.00 6.675±0.00 2.977±0.54 4.813±3.28 1.573±0.00 19.245±0.00 14.463±4.22 28.315±3.85
ENST00000601170 2.109±0.00 2.055±0.00 N/A 3.435±1.74 3.165±0.00 1.184±0.00 0.551±0.00 5.087±0.00 1.126±0.00 1.620±0.00 0.729±0.00 3.352±1.97 6.001±0.62 11.416±0.21
ENST00000602222 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.495±0.00 1.430±0.00 N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000184 IMP:IEA nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0005515 IPI protein binding
GO:0005622 IDA intracellular
GO:0005829 TAS cytosol
GO:0010467 TAS gene expression
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0042802 IPI identical protein binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000076627 SMG9 SMG9 nonsense mediated mRNA decay factor protein_coding Danio_rerio
ENSMUSG00000002210 Smg9 smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans) protein_coding Mus_musculus

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