C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000002210 Smg9 10090 + 7:24399619-24422778 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000002280 Smg9-001 24399619-24422778 protein_coding
  ENSMUST00000108434 Smg9-004 24399921-24407563 protein_coding
  ENSMUST00000123188 Smg9-007 24414975-24420930 protein_coding
  ENSMUST00000139481 Smg9-003 24399724-24405851 retained_intron
  ENSMUST00000146381 Smg9-002 24399619-24408273 retained_intron
  ENSMUST00000146686 Smg9-006 24420195-24422639 retained_intron
  ENSMUST00000148288 Smg9-005 24414733-24420930 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000002280ENSMUST00000146686ENSMUST00000148288
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000002280 9.995±1.99 10.273±1.65 10.951±1.13 11.350±4.20 10.679±2.06 10.637±2.05 2.741±0.24 9.457±1.19 7.704±4.60 11.223±0.64 6.485±0.50 12.153±5.12 5.560±2.97 27.401±7.45
ENSMUST00000146686 4.872±0.24 N/A N/A 6.455±0.95 N/A N/A 1.461±0.14 N/A N/A 4.063±0.00 N/A 7.087±0.08 0.769±0.00 N/A
ENSMUST00000148288 N/A 9.946±1.50 N/A N/A 8.146±0.00 9.785±0.56 2.215±0.38 N/A N/A N/A N/A 5.441±1.02 N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000184 ISS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0005515 IEA protein binding
GO:0005622 IEA intracellular
GO:0042802 IEA identical protein binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000076627 SMG9 SMG9 nonsense mediated mRNA decay factor protein_coding Danio_rerio
ENSG00000105771 SMG9 SMG9 nonsense mediated mRNA decay factor protein_coding Homo_sapiens

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