C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SMG9 nonsense mediated mRNA decay factor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000270066 SMG9-001 ENSG00000105771 9606 - 19:43727992-43754990 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLungOvaryPlacentaTestisENST00000270066
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Lung Ovary Placenta Testis
ENST00000270066 0.367±0.00 2.051±0.00 0.748±0.00 0.285±0.00 0.177±0.00 0.293±0.09 0.922±0.00 0.834±0.29 1.170±0.25 2.272±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000184 IMP:IEA nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0005515 IPI protein binding
GO:0005622 IDA intracellular
GO:0005829 TAS cytosol
GO:0010467 TAS gene expression
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0042802 IPI identical protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000002280 Smg9-001 protein_coding Mus_musculus 0 1940
ENSMUST00000146381 Smg9-002 retained_intron Mus_musculus 0 874
ENSMUST00000148288 Smg9-005 retained_intron Mus_musculus 0 736
ENSMUST00000108434 Smg9-004 protein_coding Mus_musculus 0 736
ENSMUST00000146686 Smg9-006 retained_intron Mus_musculus 0 619
ENSMUST00000139481 Smg9-003 retained_intron Mus_musculus 0 331
ENSMUST00000123188 Smg9-007 protein_coding Mus_musculus 0 318
ENSMUST00000157025 Ctr9-003 retained_intron Mus_musculus 0.000002 60
ENSMUST00000152019 Ctr9-002 retained_intron Mus_musculus 0.000002 60

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