C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Sp4 transcription factor
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000105866 SP4 9606 + 7:21428034-21514822 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000222584 SP4-001 21428034-21514822 protein_coding
  ENST00000432066 SP4-004 21428043-21477239 protein_coding
  ENST00000440636 SP4-003 21428195-21428900 retained_intron
  ENST00000448246 SP4-002 21428044-21514554 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000222584ENST00000448246
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000222584 0.896±0.00 0.929±0.00 N/A 1.212±0.05 0.821±0.02 0.820±0.16 1.075±0.38 0.311±0.14 0.745±0.59 0.782±0.06 1.339±0.99 1.670±0.89 0.171±0.01 1.038±0.48
ENST00000448246 0.187±0.00 0.736±0.00 0.257±0.00 0.277±0.00 N/A N/A N/A 0.502±0.00 0.090±0.00 0.692±0.00 N/A 0.310±0.00 0.102±0.04 0.538±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008EX CIL_0008EX_0001 VISTA 7:20900156-21501303
CIL_0007P2 CIL_0007P2_0002 UCNEbase 7:21278351-22052549

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0003713 TAS transcription coactivator activity
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006357 IDA regulation of transcription from RNA polymerase II promoter
GO:0008016 IEA regulation of heart contraction
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000005186 sp4 sp4 transcription factor protein_coding Danio_rerio
ENSMUSG00000025323 Sp4 trans-acting transcription factor 4 protein_coding Mus_musculus

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