| Source ID |
Type |
Tax ID |
Position |
| SP8 |
UCNEbase |
7955 |
19:2566913-2573351  |
| Gene | Transcript | Position | Biotype |
|---|
Notice (8): Undefined index: CIL_0007P2_0005 [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0007P2_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007P2_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007P2_0003' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007P2_0004' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000219451' => 'ribosomal protein L23 pseudogene 8',
'ENSG00000225308' => 'argininosuccinate synthetase 1 pseudogene 11',
'ENSG00000232790' => 'long intergenic non-protein coding RNA 1162',
'ENSG00000234839' => 'ribosomal protein S26 pseudogene 30',
'ENSG00000243633' => 'RNA, 7SL, cytoplasmic 542, pseudogene',
'ENSG00000105866' => 'Sp4 transcription factor',
'ENSG00000105877' => 'dynein, axonemal, heavy chain 11',
'ENSG00000164649' => 'cell division cycle associated 7-like',
'ENSG00000195024' => 'RNA, U1 small nuclear 15, pseudogene',
'ENSG00000221783' => 'microRNA 1183',
'ENSG00000229949' => null,
'ENSG00000266862' => null,
'ENSMUSG00000018581' => 'dynein, axonemal, heavy chain 11',
'ENSMUSG00000021175' => 'cell division cycle associated 7 like',
'ENSMUSG00000025323' => 'trans-acting transcription factor 4',
'ENSMUSG00000065348' => 'predicted gene, 25577',
'ENSMUSG00000088797' => 'predicted gene, 22537',
'ENSMUSG00000093544' => 'predicted gene 20613',
'ENSDARG00000056666' => 'sp8 transcription factor b',
'ENSDARG00000077384' => 'dynein, axonemal, heavy chain 11',
'ENSDARG00000093927' => 'si:ch211-180p9.2',
'ENSDARG00000094282' => 'dynein, axonemal, heavy chain 11'
),
'gene_name_arr' => array(
'ENSG00000219451' => 'RPL23P8',
'ENSG00000225308' => 'ASS1P11',
'ENSG00000232790' => 'LINC01162',
'ENSG00000234839' => 'RPS26P30',
'ENSG00000243633' => 'RN7SL542P',
'ENSG00000105866' => 'SP4',
'ENSG00000105877' => 'DNAH11',
'ENSG00000164649' => 'CDCA7L',
'ENSG00000195024' => 'RNU1-15P',
'ENSG00000221783' => 'MIR1183',
'ENSG00000229949' => 'AC005094.2',
'ENSG00000266862' => 'AC004595.1',
'ENSMUSG00000018581' => 'Dnah11',
'ENSMUSG00000021175' => 'Cdca7l',
'ENSMUSG00000025323' => 'Sp4',
'ENSMUSG00000065348' => 'Gm25577',
'ENSMUSG00000088797' => 'Gm22537',
'ENSMUSG00000093544' => 'Gm20613',
'ENSDARG00000056666' => 'sp8b',
'ENSDARG00000077384' => 'dnah11',
'ENSDARG00000093927' => 'si:ch211-180p9.2',
'ENSDARG00000094282' => 'DNAH11 (2 of 2)'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 2 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 3 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 4 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 8 => 'Adrenal',
(int) 17 => 'Bladder',
(int) 20 => 'Brain',
(int) 41 => 'Breast',
(int) 53 => 'Colon',
(int) 62 => 'Heart',
(int) 77 => 'Kidney',
(int) 91 => 'Liver',
(int) 105 => 'Lung',
(int) 115 => 'Muscle',
(int) 133 => 'Ovary',
(int) 148 => 'Placenta',
(int) 161 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 55,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENST00000405810' => array(
'start' => '20827326',
'end' => '20827753',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RPL23P8-001'
),
'ENST00000441309' => array(
'start' => '21220213',
'end' => '21221428',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'ASS1P11-001'
),
'ENST00000447262' => array(
'start' => '20835431',
'end' => '21023148',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01162-001'
),
'ENST00000443431' => array(
'start' => '20843627',
'end' => '20843961',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RPS26P30-001'
),
'ENST00000467147' => array(
'start' => '21215537',
'end' => '21215830',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'RN7SL542P-201'
),
'ENST00000222584' => array(
'start' => '21428034',
'end' => '21514822',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SP4-001'
),
'ENST00000432066' => array(
'start' => '21428043',
'end' => '21477239',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SP4-004'
),
'ENST00000440636' => array(
'start' => '21428195',
'end' => '21428900',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'SP4-003'
),
'ENST00000448246' => array(
'start' => '21428044',
'end' => '21514554',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'SP4-002'
),
'ENST00000328843' => array(
'start' => '21543215',
'end' => '21901568',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DNAH11-201'
),
'ENST00000409508' => array(
'start' => '21543215',
'end' => '21901839',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DNAH11-001'
),
'ENST00000421290' => array(
'start' => '21851563',
'end' => '21862011',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'DNAH11-003'
),
'ENST00000465129' => array(
'start' => '21702710',
'end' => '21703773',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'DNAH11-007'
),
'ENST00000465593' => array(
'start' => '21618194',
'end' => '21636078',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'DNAH11-005'
),
'ENST00000479878' => array(
'start' => '21892625',
'end' => '21901116',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'DNAH11-002'
),
'ENST00000483691' => array(
'start' => '21559715',
'end' => '21561446',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'DNAH11-004'
),
'ENST00000496218' => array(
'start' => '21561091',
'end' => '21570716',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'DNAH11-006'
),
'ENST00000605912' => array(
'start' => '21735640',
'end' => '21744919',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DNAH11-009'
),
'ENST00000607050' => array(
'start' => '21543446',
'end' => '21545149',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'DNAH11-008'
),
'ENST00000607413' => array(
'start' => '21851162',
'end' => '21861970',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'DNAH11-010'
),
'ENST00000620169' => array(
'start' => '21543215',
'end' => '21901321',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DNAH11-202'
),
'ENST00000356195' => array(
'start' => '21900900',
'end' => '21945878',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CDCA7L-006'
),
'ENST00000373934' => array(
'start' => '21901799',
'end' => '21945884',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CDCA7L-010'
),
'ENST00000406877' => array(
'start' => '21900901',
'end' => '21946084',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CDCA7L-001'
),
'ENST00000435031' => array(
'start' => '21908421',
'end' => '21944873',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CDCA7L-002'
),
'ENST00000435717' => array(
'start' => '21902654',
'end' => '21904259',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CDCA7L-008'
),
'ENST00000447180' => array(
'start' => '21908367',
'end' => '21945878',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CDCA7L-007'
),
'ENST00000457951' => array(
'start' => '21908201',
'end' => '21945903',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CDCA7L-009'
),
'ENST00000465490' => array(
'start' => '21904150',
'end' => '21916897',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'CDCA7L-003'
),
'ENST00000488845' => array(
'start' => '21900901',
'end' => '21905709',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'CDCA7L-004'
),
'ENST00000489669' => array(
'start' => '21903759',
'end' => '21905575',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'CDCA7L-005'
),
'ENST00000353977' => array(
'start' => '21381363',
'end' => '21381506',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'RNU1-15P-201'
),
'ENST00000408856' => array(
'start' => '21471058',
'end' => '21471146',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'MIR1183-201'
),
'ENST00000440420' => array(
'start' => '21400920',
'end' => '21401613',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'AC005094.2-001'
),
'ENST00000578020' => array(
'start' => '21422269',
'end' => '21422368',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AC004595.1-201'
),
'ENSMUST00000084806' => array(
'start' => '117877982',
'end' => '118199043',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Dnah11-001'
),
'ENSMUST00000175662' => array(
'start' => '117903214',
'end' => '117915738',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Dnah11-004'
),
'ENSMUST00000176239' => array(
'start' => '117903230',
'end' => '117915964',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Dnah11-003'
),
'ENSMUST00000176756' => array(
'start' => '117877982',
'end' => '118060303',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Dnah11-002'
),
'ENSMUST00000021592' => array(
'start' => '117843515',
'end' => '117878706',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cdca7l-001'
),
'ENSMUST00000176499' => array(
'start' => '117804289',
'end' => '117870047',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Cdca7l-002'
),
'ENSMUST00000176735' => array(
'start' => '117843884',
'end' => '117873757',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cdca7l-004'
),
'ENSMUST00000177339' => array(
'start' => '117843888',
'end' => '117875627',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cdca7l-003'
),
'ENSMUST00000026367' => array(
'start' => '118234933',
'end' => '118301440',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Sp4-201'
),
'ENSMUST00000083414' => array(
'start' => '118504928',
'end' => '118505034',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'Gm25577-201'
),
'ENSMUST00000158172' => array(
'start' => '118753554',
'end' => '118753752',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Gm22537-201'
),
'ENSMUST00000175828' => array(
'start' => '117834007',
'end' => '117834351',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm20613-001'
),
'ENSDART00000079201' => array(
'start' => '21493945',
'end' => '21496078',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'sp8b-001'
),
'ENSDART00000112147' => array(
'start' => '21491401',
'end' => '21496982',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'sp8b-201'
),
'ENSDART00000112894' => array(
'start' => '21493920',
'end' => '21496078',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'sp8b-002'
),
'ENSDART00000139357' => array(
'start' => '21494067',
'end' => '21495157',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'sp8b-004'
),
'ENSDART00000020821' => array(
'start' => '21140318',
'end' => '21330406',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'dnah11-201'
),
'ENSDART00000148294' => array(
'start' => '21263828',
'end' => '21330616',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'dnah11-001'
),
'ENSDART00000135879' => array(
'start' => '21379601',
'end' => '21381439',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'si:ch211-180p9.2-001'
),
'ENSDART00000138744' => array(
'start' => '21138769',
'end' => '21211929',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DNAH11 (2 of 2)-001'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0007P2_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007P2_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007P2_0003' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007P2_0004' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0007P2_0001' => array(
'genes_in_region' => array(
'ENSG00000219451' => array(
[maximum depth reached]
),
'ENSG00000225308' => array(
[maximum depth reached]
),
'ENSG00000232790' => array(
[maximum depth reached]
),
'ENSG00000234839' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Brain',
(int) 3 => 'Breast',
(int) 4 => 'Colon',
(int) 5 => 'Heart',
(int) 6 => 'Kidney',
(int) 7 => 'Liver',
(int) 8 => 'Lung',
(int) 9 => 'Muscle',
(int) 10 => 'Ovary',
(int) 11 => 'Placenta',
(int) 12 => 'Testis',
(int) 13 => 'Adipose',
(int) 14 => 'Adrenal',
(int) 15 => 'Breast',
(int) 16 => 'Colon',
(int) 17 => 'Heart',
(int) 18 => 'Kidney',
(int) 19 => 'Liver',
(int) 20 => 'Muscle',
(int) 21 => 'Ovary',
(int) 22 => 'Testis',
(int) 23 => 'Breast',
(int) 24 => 'Placenta',
(int) 25 => 'Testis',
(int) 26 => 'Placenta',
(int) 27 => 'Testis'
)
),
'CIL_0007P2_0002' => array(
'genes_in_region' => array(
'ENSG00000105866' => array(
[maximum depth reached]
),
'ENSG00000164649' => array(
[maximum depth reached]
),
'ENSG00000221783' => array(
[maximum depth reached]
),
'ENSG00000266862' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Brain',
(int) 3 => 'Breast',
(int) 4 => 'Colon',
(int) 5 => 'Heart',
(int) 6 => 'Kidney',
(int) 7 => 'Liver',
(int) 8 => 'Lung',
(int) 9 => 'Muscle',
(int) 10 => 'Ovary',
(int) 11 => 'Placenta',
(int) 12 => 'Testis',
(int) 13 => 'Adipose',
(int) 14 => 'Adrenal',
(int) 15 => 'Bladder',
(int) 16 => 'Brain',
(int) 17 => 'Kidney',
(int) 18 => 'Liver',
(int) 19 => 'Lung',
(int) 20 => 'Ovary',
(int) 21 => 'Placenta',
(int) 22 => 'Testis',
(int) 23 => 'Ovary',
(int) 24 => 'Brain',
(int) 25 => 'Kidney',
(int) 26 => 'Liver',
(int) 27 => 'Lung',
(int) 28 => 'Muscle',
(int) 29 => 'Ovary',
(int) 30 => 'Ovary',
(int) 31 => 'Placenta',
(int) 32 => 'Testis',
(int) 33 => 'Brain',
(int) 34 => 'Breast',
(int) 35 => 'Colon',
(int) 36 => 'Muscle',
(int) 37 => 'Adipose',
(int) 38 => 'Adrenal',
(int) 39 => 'Brain',
(int) 40 => 'Breast',
(int) 41 => 'Colon',
(int) 42 => 'Heart',
(int) 43 => 'Kidney',
(int) 44 => 'Liver',
(int) 45 => 'Lung',
(int) 46 => 'Muscle',
(int) 47 => 'Ovary',
(int) 48 => 'Placenta',
(int) 49 => 'Testis',
(int) 50 => 'Muscle',
(int) 51 => 'Colon',
(int) 52 => 'Muscle',
(int) 53 => 'Brain',
(int) 54 => 'Breast',
(int) 55 => 'Muscle',
(int) 56 => 'Adrenal',
(int) 57 => 'Brain',
(int) 58 => 'Breast',
(int) 59 => 'Kidney',
(int) 60 => 'Liver',
(int) 61 => 'Muscle',
(int) 62 => 'Ovary',
(int) 63 => 'Placenta',
(int) 64 => 'Ovary',
(int) 65 => 'Testis',
(int) 66 => 'Adipose',
(int) 67 => 'Adrenal',
(int) 68 => 'Brain',
(int) 69 => 'Breast',
(int) 70 => 'Colon',
(int) 71 => 'Heart',
(int) 72 => 'Kidney',
(int) 73 => 'Lung',
(int) 74 => 'Muscle',
(int) 75 => 'Testis'
)
),
'CIL_0007P2_0003' => array(
'genes_in_region' => array(
'ENSMUSG00000018581' => array(
[maximum depth reached]
),
'ENSMUSG00000021175' => array(
[maximum depth reached]
),
'ENSMUSG00000025323' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Liver',
(int) 3 => 'Lung',
(int) 4 => 'Ovary',
(int) 5 => 'Testis',
(int) 6 => 'Brain',
(int) 7 => 'Adrenal',
(int) 8 => 'Brain',
(int) 9 => 'Breast',
(int) 10 => 'Heart',
(int) 11 => 'Liver',
(int) 12 => 'Lung',
(int) 13 => 'Muscle',
(int) 14 => 'Ovary',
(int) 15 => 'Placenta',
(int) 16 => 'Testis',
(int) 17 => 'Adipose',
(int) 18 => 'Bladder',
(int) 19 => 'Brain',
(int) 20 => 'Breast',
(int) 21 => 'Colon',
(int) 22 => 'Heart',
(int) 23 => 'Kidney',
(int) 24 => 'Liver',
(int) 25 => 'Lung',
(int) 26 => 'Muscle',
(int) 27 => 'Ovary',
(int) 28 => 'Placenta',
(int) 29 => 'Testis',
(int) 30 => 'Brain',
(int) 31 => 'Heart',
(int) 32 => 'Liver',
(int) 33 => 'Ovary',
(int) 34 => 'Placenta',
(int) 35 => 'Testis',
(int) 36 => 'Liver',
(int) 37 => 'Muscle',
(int) 38 => 'Placenta',
(int) 39 => 'Adipose',
(int) 40 => 'Adrenal',
(int) 41 => 'Bladder',
(int) 42 => 'Brain',
(int) 43 => 'Breast',
(int) 44 => 'Colon',
(int) 45 => 'Heart',
(int) 46 => 'Kidney',
(int) 47 => 'Liver',
(int) 48 => 'Lung',
(int) 49 => 'Muscle',
(int) 50 => 'Ovary',
(int) 51 => 'Placenta',
(int) 52 => 'Testis'
)
),
'CIL_0007P2_0004' => array(
'genes_in_region' => array(
'ENSDARG00000056666' => array(
[maximum depth reached]
),
'ENSDARG00000077384' => array(
[maximum depth reached]
),
'ENSDARG00000093927' => array(
[maximum depth reached]
),
'ENSDARG00000094282' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Heart',
(int) 1 => 'Muscle',
(int) 2 => 'Brain',
(int) 3 => 'Kidney',
(int) 4 => 'Brain',
(int) 5 => 'Brain',
(int) 6 => 'Brain',
(int) 7 => 'Heart',
(int) 8 => 'Kidney',
(int) 9 => 'Brain',
(int) 10 => 'Heart',
(int) 11 => 'Kidney',
(int) 12 => 'Muscle',
(int) 13 => 'Heart',
(int) 14 => 'Brain',
(int) 15 => 'Heart',
(int) 16 => 'Kidney',
(int) 17 => 'Liver',
(int) 18 => 'Muscle'
)
)
)
$gene_desc_arr = array(
'ENSG00000219451' => 'ribosomal protein L23 pseudogene 8',
'ENSG00000225308' => 'argininosuccinate synthetase 1 pseudogene 11',
'ENSG00000232790' => 'long intergenic non-protein coding RNA 1162',
'ENSG00000234839' => 'ribosomal protein S26 pseudogene 30',
'ENSG00000243633' => 'RNA, 7SL, cytoplasmic 542, pseudogene',
'ENSG00000105866' => 'Sp4 transcription factor',
'ENSG00000105877' => 'dynein, axonemal, heavy chain 11',
'ENSG00000164649' => 'cell division cycle associated 7-like',
'ENSG00000195024' => 'RNA, U1 small nuclear 15, pseudogene',
'ENSG00000221783' => 'microRNA 1183',
'ENSG00000229949' => null,
'ENSG00000266862' => null,
'ENSMUSG00000018581' => 'dynein, axonemal, heavy chain 11',
'ENSMUSG00000021175' => 'cell division cycle associated 7 like',
'ENSMUSG00000025323' => 'trans-acting transcription factor 4',
'ENSMUSG00000065348' => 'predicted gene, 25577',
'ENSMUSG00000088797' => 'predicted gene, 22537',
'ENSMUSG00000093544' => 'predicted gene 20613',
'ENSDARG00000056666' => 'sp8 transcription factor b',
'ENSDARG00000077384' => 'dynein, axonemal, heavy chain 11',
'ENSDARG00000093927' => 'si:ch211-180p9.2',
'ENSDARG00000094282' => 'dynein, axonemal, heavy chain 11'
)
$gene_name_arr = array(
'ENSG00000219451' => 'RPL23P8',
'ENSG00000225308' => 'ASS1P11',
'ENSG00000232790' => 'LINC01162',
'ENSG00000234839' => 'RPS26P30',
'ENSG00000243633' => 'RN7SL542P',
'ENSG00000105866' => 'SP4',
'ENSG00000105877' => 'DNAH11',
'ENSG00000164649' => 'CDCA7L',
'ENSG00000195024' => 'RNU1-15P',
'ENSG00000221783' => 'MIR1183',
'ENSG00000229949' => 'AC005094.2',
'ENSG00000266862' => 'AC004595.1',
'ENSMUSG00000018581' => 'Dnah11',
'ENSMUSG00000021175' => 'Cdca7l',
'ENSMUSG00000025323' => 'Sp4',
'ENSMUSG00000065348' => 'Gm25577',
'ENSMUSG00000088797' => 'Gm22537',
'ENSMUSG00000093544' => 'Gm20613',
'ENSDARG00000056666' => 'sp8b',
'ENSDARG00000077384' => 'dnah11',
'ENSDARG00000093927' => 'si:ch211-180p9.2',
'ENSDARG00000094282' => 'DNAH11 (2 of 2)'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007P2_0001',
'tax_id' => '9606',
'chromosome' => '7',
'seq_start' => '20790061',
'seq_end' => '21278350',
'region_length' => '488289',
'region_type' => 'UCNEbase',
'el_id' => 'SP8'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007P2_0002',
'tax_id' => '9606',
'chromosome' => '7',
'seq_start' => '21278351',
'seq_end' => '22052549',
'region_length' => '774198',
'region_type' => 'UCNEbase',
'el_id' => 'SP8'
)
),
(int) 2 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007P2_0003',
'tax_id' => '10090',
'chromosome' => '12',
'seq_start' => '117806045',
'seq_end' => '118844257',
'region_length' => '1038212',
'region_type' => 'UCNEbase',
'el_id' => 'SP8'
)
),
(int) 3 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007P2_0004',
'tax_id' => '7955',
'chromosome' => '16',
'seq_start' => '21155703',
'seq_end' => '21492450',
'region_length' => '336747',
'region_type' => 'UCNEbase',
'el_id' => 'SP8'
)
),
(int) 4 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007P2_0005',
'tax_id' => '7955',
'chromosome' => '19',
'seq_start' => '2566913',
'seq_end' => '2573351',
'region_length' => '6438',
'region_type' => 'UCNEbase',
'el_id' => 'SP8'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 8 => 'Adrenal',
(int) 17 => 'Bladder',
(int) 20 => 'Brain',
(int) 41 => 'Breast',
(int) 53 => 'Colon',
(int) 62 => 'Heart',
(int) 77 => 'Kidney',
(int) 91 => 'Liver',
(int) 105 => 'Lung',
(int) 115 => 'Muscle',
(int) 133 => 'Ovary',
(int) 148 => 'Placenta',
(int) 161 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 55
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000405810' => array(
'start' => '20827326',
'end' => '20827753',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RPL23P8-001'
),
'ENST00000441309' => array(
'start' => '21220213',
'end' => '21221428',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'ASS1P11-001'
),
'ENST00000447262' => array(
'start' => '20835431',
'end' => '21023148',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01162-001'
),
'ENST00000443431' => array(
'start' => '20843627',
'end' => '20843961',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RPS26P30-001'
),
'ENST00000467147' => array(
'start' => '21215537',
'end' => '21215830',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'RN7SL542P-201'
),
'ENST00000222584' => array(
'start' => '21428034',
'end' => '21514822',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SP4-001'
),
'ENST00000432066' => array(
'start' => '21428043',
'end' => '21477239',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SP4-004'
),
'ENST00000440636' => array(
'start' => '21428195',
'end' => '21428900',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'SP4-003'
),
'ENST00000448246' => array(
'start' => '21428044',
'end' => '21514554',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'SP4-002'
),
'ENST00000328843' => array(
'start' => '21543215',
'end' => '21901568',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DNAH11-201'
),
'ENST00000409508' => array(
'start' => '21543215',
'end' => '21901839',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DNAH11-001'
),
'ENST00000421290' => array(
'start' => '21851563',
'end' => '21862011',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'DNAH11-003'
),
'ENST00000465129' => array(
'start' => '21702710',
'end' => '21703773',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'DNAH11-007'
),
'ENST00000465593' => array(
'start' => '21618194',
'end' => '21636078',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'DNAH11-005'
),
'ENST00000479878' => array(
'start' => '21892625',
'end' => '21901116',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'DNAH11-002'
),
'ENST00000483691' => array(
'start' => '21559715',
'end' => '21561446',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'DNAH11-004'
),
'ENST00000496218' => array(
'start' => '21561091',
'end' => '21570716',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'DNAH11-006'
),
'ENST00000605912' => array(
'start' => '21735640',
'end' => '21744919',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DNAH11-009'
),
'ENST00000607050' => array(
'start' => '21543446',
'end' => '21545149',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'DNAH11-008'
),
'ENST00000607413' => array(
'start' => '21851162',
'end' => '21861970',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'DNAH11-010'
),
'ENST00000620169' => array(
'start' => '21543215',
'end' => '21901321',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DNAH11-202'
),
'ENST00000356195' => array(
'start' => '21900900',
'end' => '21945878',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CDCA7L-006'
),
'ENST00000373934' => array(
'start' => '21901799',
'end' => '21945884',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CDCA7L-010'
),
'ENST00000406877' => array(
'start' => '21900901',
'end' => '21946084',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CDCA7L-001'
),
'ENST00000435031' => array(
'start' => '21908421',
'end' => '21944873',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CDCA7L-002'
),
'ENST00000435717' => array(
'start' => '21902654',
'end' => '21904259',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CDCA7L-008'
),
'ENST00000447180' => array(
'start' => '21908367',
'end' => '21945878',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CDCA7L-007'
),
'ENST00000457951' => array(
'start' => '21908201',
'end' => '21945903',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CDCA7L-009'
),
'ENST00000465490' => array(
'start' => '21904150',
'end' => '21916897',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'CDCA7L-003'
),
'ENST00000488845' => array(
'start' => '21900901',
'end' => '21905709',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'CDCA7L-004'
),
'ENST00000489669' => array(
'start' => '21903759',
'end' => '21905575',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'CDCA7L-005'
),
'ENST00000353977' => array(
'start' => '21381363',
'end' => '21381506',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'RNU1-15P-201'
),
'ENST00000408856' => array(
'start' => '21471058',
'end' => '21471146',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'MIR1183-201'
),
'ENST00000440420' => array(
'start' => '21400920',
'end' => '21401613',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'AC005094.2-001'
),
'ENST00000578020' => array(
'start' => '21422269',
'end' => '21422368',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AC004595.1-201'
),
'ENSMUST00000084806' => array(
'start' => '117877982',
'end' => '118199043',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Dnah11-001'
),
'ENSMUST00000175662' => array(
'start' => '117903214',
'end' => '117915738',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Dnah11-004'
),
'ENSMUST00000176239' => array(
'start' => '117903230',
'end' => '117915964',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Dnah11-003'
),
'ENSMUST00000176756' => array(
'start' => '117877982',
'end' => '118060303',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Dnah11-002'
),
'ENSMUST00000021592' => array(
'start' => '117843515',
'end' => '117878706',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cdca7l-001'
),
'ENSMUST00000176499' => array(
'start' => '117804289',
'end' => '117870047',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Cdca7l-002'
),
'ENSMUST00000176735' => array(
'start' => '117843884',
'end' => '117873757',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cdca7l-004'
),
'ENSMUST00000177339' => array(
'start' => '117843888',
'end' => '117875627',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cdca7l-003'
),
'ENSMUST00000026367' => array(
'start' => '118234933',
'end' => '118301440',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Sp4-201'
),
'ENSMUST00000083414' => array(
'start' => '118504928',
'end' => '118505034',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'Gm25577-201'
),
'ENSMUST00000158172' => array(
'start' => '118753554',
'end' => '118753752',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Gm22537-201'
),
'ENSMUST00000175828' => array(
'start' => '117834007',
'end' => '117834351',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm20613-001'
),
'ENSDART00000079201' => array(
'start' => '21493945',
'end' => '21496078',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'sp8b-001'
),
'ENSDART00000112147' => array(
'start' => '21491401',
'end' => '21496982',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'sp8b-201'
),
'ENSDART00000112894' => array(
'start' => '21493920',
'end' => '21496078',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'sp8b-002'
),
'ENSDART00000139357' => array(
'start' => '21494067',
'end' => '21495157',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'sp8b-004'
),
'ENSDART00000020821' => array(
'start' => '21140318',
'end' => '21330406',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'dnah11-201'
),
'ENSDART00000148294' => array(
'start' => '21263828',
'end' => '21330616',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'dnah11-001'
),
'ENSDART00000135879' => array(
'start' => '21379601',
'end' => '21381439',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'si:ch211-180p9.2-001'
),
'ENSDART00000138744' => array(
'start' => '21138769',
'end' => '21211929',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DNAH11 (2 of 2)-001'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0007P2_0001' => array(
'genes_in_region' => array(
'ENSG00000219451' => array(
[maximum depth reached]
),
'ENSG00000225308' => array(
[maximum depth reached]
),
'ENSG00000232790' => array(
[maximum depth reached]
),
'ENSG00000234839' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Brain',
(int) 3 => 'Breast',
(int) 4 => 'Colon',
(int) 5 => 'Heart',
(int) 6 => 'Kidney',
(int) 7 => 'Liver',
(int) 8 => 'Lung',
(int) 9 => 'Muscle',
(int) 10 => 'Ovary',
(int) 11 => 'Placenta',
(int) 12 => 'Testis',
(int) 13 => 'Adipose',
(int) 14 => 'Adrenal',
(int) 15 => 'Breast',
(int) 16 => 'Colon',
(int) 17 => 'Heart',
(int) 18 => 'Kidney',
(int) 19 => 'Liver',
(int) 20 => 'Muscle',
(int) 21 => 'Ovary',
(int) 22 => 'Testis',
(int) 23 => 'Breast',
(int) 24 => 'Placenta',
(int) 25 => 'Testis',
(int) 26 => 'Placenta',
(int) 27 => 'Testis'
)
),
'CIL_0007P2_0002' => array(
'genes_in_region' => array(
'ENSG00000105866' => array(
[maximum depth reached]
),
'ENSG00000164649' => array(
[maximum depth reached]
),
'ENSG00000221783' => array(
[maximum depth reached]
),
'ENSG00000266862' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Brain',
(int) 3 => 'Breast',
(int) 4 => 'Colon',
(int) 5 => 'Heart',
(int) 6 => 'Kidney',
(int) 7 => 'Liver',
(int) 8 => 'Lung',
(int) 9 => 'Muscle',
(int) 10 => 'Ovary',
(int) 11 => 'Placenta',
(int) 12 => 'Testis',
(int) 13 => 'Adipose',
(int) 14 => 'Adrenal',
(int) 15 => 'Bladder',
(int) 16 => 'Brain',
(int) 17 => 'Kidney',
(int) 18 => 'Liver',
(int) 19 => 'Lung',
(int) 20 => 'Ovary',
(int) 21 => 'Placenta',
(int) 22 => 'Testis',
(int) 23 => 'Ovary',
(int) 24 => 'Brain',
(int) 25 => 'Kidney',
(int) 26 => 'Liver',
(int) 27 => 'Lung',
(int) 28 => 'Muscle',
(int) 29 => 'Ovary',
(int) 30 => 'Ovary',
(int) 31 => 'Placenta',
(int) 32 => 'Testis',
(int) 33 => 'Brain',
(int) 34 => 'Breast',
(int) 35 => 'Colon',
(int) 36 => 'Muscle',
(int) 37 => 'Adipose',
(int) 38 => 'Adrenal',
(int) 39 => 'Brain',
(int) 40 => 'Breast',
(int) 41 => 'Colon',
(int) 42 => 'Heart',
(int) 43 => 'Kidney',
(int) 44 => 'Liver',
(int) 45 => 'Lung',
(int) 46 => 'Muscle',
(int) 47 => 'Ovary',
(int) 48 => 'Placenta',
(int) 49 => 'Testis',
(int) 50 => 'Muscle',
(int) 51 => 'Colon',
(int) 52 => 'Muscle',
(int) 53 => 'Brain',
(int) 54 => 'Breast',
(int) 55 => 'Muscle',
(int) 56 => 'Adrenal',
(int) 57 => 'Brain',
(int) 58 => 'Breast',
(int) 59 => 'Kidney',
(int) 60 => 'Liver',
(int) 61 => 'Muscle',
(int) 62 => 'Ovary',
(int) 63 => 'Placenta',
(int) 64 => 'Ovary',
(int) 65 => 'Testis',
(int) 66 => 'Adipose',
(int) 67 => 'Adrenal',
(int) 68 => 'Brain',
(int) 69 => 'Breast',
(int) 70 => 'Colon',
(int) 71 => 'Heart',
(int) 72 => 'Kidney',
(int) 73 => 'Lung',
(int) 74 => 'Muscle',
(int) 75 => 'Testis'
)
),
'CIL_0007P2_0003' => array(
'genes_in_region' => array(
'ENSMUSG00000018581' => array(
[maximum depth reached]
),
'ENSMUSG00000021175' => array(
[maximum depth reached]
),
'ENSMUSG00000025323' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Liver',
(int) 3 => 'Lung',
(int) 4 => 'Ovary',
(int) 5 => 'Testis',
(int) 6 => 'Brain',
(int) 7 => 'Adrenal',
(int) 8 => 'Brain',
(int) 9 => 'Breast',
(int) 10 => 'Heart',
(int) 11 => 'Liver',
(int) 12 => 'Lung',
(int) 13 => 'Muscle',
(int) 14 => 'Ovary',
(int) 15 => 'Placenta',
(int) 16 => 'Testis',
(int) 17 => 'Adipose',
(int) 18 => 'Bladder',
(int) 19 => 'Brain',
(int) 20 => 'Breast',
(int) 21 => 'Colon',
(int) 22 => 'Heart',
(int) 23 => 'Kidney',
(int) 24 => 'Liver',
(int) 25 => 'Lung',
(int) 26 => 'Muscle',
(int) 27 => 'Ovary',
(int) 28 => 'Placenta',
(int) 29 => 'Testis',
(int) 30 => 'Brain',
(int) 31 => 'Heart',
(int) 32 => 'Liver',
(int) 33 => 'Ovary',
(int) 34 => 'Placenta',
(int) 35 => 'Testis',
(int) 36 => 'Liver',
(int) 37 => 'Muscle',
(int) 38 => 'Placenta',
(int) 39 => 'Adipose',
(int) 40 => 'Adrenal',
(int) 41 => 'Bladder',
(int) 42 => 'Brain',
(int) 43 => 'Breast',
(int) 44 => 'Colon',
(int) 45 => 'Heart',
(int) 46 => 'Kidney',
(int) 47 => 'Liver',
(int) 48 => 'Lung',
(int) 49 => 'Muscle',
(int) 50 => 'Ovary',
(int) 51 => 'Placenta',
(int) 52 => 'Testis'
)
),
'CIL_0007P2_0004' => array(
'genes_in_region' => array(
'ENSDARG00000056666' => array(
[maximum depth reached]
),
'ENSDARG00000077384' => array(
[maximum depth reached]
),
'ENSDARG00000093927' => array(
[maximum depth reached]
),
'ENSDARG00000094282' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Heart',
(int) 1 => 'Muscle',
(int) 2 => 'Brain',
(int) 3 => 'Kidney',
(int) 4 => 'Brain',
(int) 5 => 'Brain',
(int) 6 => 'Brain',
(int) 7 => 'Heart',
(int) 8 => 'Kidney',
(int) 9 => 'Brain',
(int) 10 => 'Heart',
(int) 11 => 'Kidney',
(int) 12 => 'Muscle',
(int) 13 => 'Heart',
(int) 14 => 'Brain',
(int) 15 => 'Heart',
(int) 16 => 'Kidney',
(int) 17 => 'Liver',
(int) 18 => 'Muscle'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0007P2_0005',
'tax_id' => '7955',
'chromosome' => '19',
'seq_start' => '2566913',
'seq_end' => '2573351',
'region_length' => '6438',
'region_type' => 'UCNEbase',
'el_id' => 'SP8'
)
)
$gene_el = array(
'ENSDART00000138744' => array(
'Brain' => array(
'average_FPKM' => '0.151',
'stddev_FPKM' => '0.13'
),
'Heart' => array(
'average_FPKM' => '0.083',
'stddev_FPKM' => '0.02'
),
'Kidney' => array(
'average_FPKM' => '0.342',
'stddev_FPKM' => '0.06'
),
'Liver' => array(
'average_FPKM' => '0.013',
'stddev_FPKM' => '0.00'
),
'Muscle' => array(
'average_FPKM' => '0.089',
'stddev_FPKM' => '0.00'
)
)
)
$gene_key = 'ENSDARG00000094282'
$is_first = false
$tran_el = array(
'Brain' => array(
'average_FPKM' => '0.151',
'stddev_FPKM' => '0.13'
),
'Heart' => array(
'average_FPKM' => '0.083',
'stddev_FPKM' => '0.02'
),
'Kidney' => array(
'average_FPKM' => '0.342',
'stddev_FPKM' => '0.06'
),
'Liver' => array(
'average_FPKM' => '0.013',
'stddev_FPKM' => '0.00'
),
'Muscle' => array(
'average_FPKM' => '0.089',
'stddev_FPKM' => '0.00'
)
)
$tran_key = 'ENSDART00000138744'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
Warning (2): Invalid argument supplied for foreach() [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0007P2_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007P2_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007P2_0003' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007P2_0004' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000219451' => 'ribosomal protein L23 pseudogene 8',
'ENSG00000225308' => 'argininosuccinate synthetase 1 pseudogene 11',
'ENSG00000232790' => 'long intergenic non-protein coding RNA 1162',
'ENSG00000234839' => 'ribosomal protein S26 pseudogene 30',
'ENSG00000243633' => 'RNA, 7SL, cytoplasmic 542, pseudogene',
'ENSG00000105866' => 'Sp4 transcription factor',
'ENSG00000105877' => 'dynein, axonemal, heavy chain 11',
'ENSG00000164649' => 'cell division cycle associated 7-like',
'ENSG00000195024' => 'RNA, U1 small nuclear 15, pseudogene',
'ENSG00000221783' => 'microRNA 1183',
'ENSG00000229949' => null,
'ENSG00000266862' => null,
'ENSMUSG00000018581' => 'dynein, axonemal, heavy chain 11',
'ENSMUSG00000021175' => 'cell division cycle associated 7 like',
'ENSMUSG00000025323' => 'trans-acting transcription factor 4',
'ENSMUSG00000065348' => 'predicted gene, 25577',
'ENSMUSG00000088797' => 'predicted gene, 22537',
'ENSMUSG00000093544' => 'predicted gene 20613',
'ENSDARG00000056666' => 'sp8 transcription factor b',
'ENSDARG00000077384' => 'dynein, axonemal, heavy chain 11',
'ENSDARG00000093927' => 'si:ch211-180p9.2',
'ENSDARG00000094282' => 'dynein, axonemal, heavy chain 11'
),
'gene_name_arr' => array(
'ENSG00000219451' => 'RPL23P8',
'ENSG00000225308' => 'ASS1P11',
'ENSG00000232790' => 'LINC01162',
'ENSG00000234839' => 'RPS26P30',
'ENSG00000243633' => 'RN7SL542P',
'ENSG00000105866' => 'SP4',
'ENSG00000105877' => 'DNAH11',
'ENSG00000164649' => 'CDCA7L',
'ENSG00000195024' => 'RNU1-15P',
'ENSG00000221783' => 'MIR1183',
'ENSG00000229949' => 'AC005094.2',
'ENSG00000266862' => 'AC004595.1',
'ENSMUSG00000018581' => 'Dnah11',
'ENSMUSG00000021175' => 'Cdca7l',
'ENSMUSG00000025323' => 'Sp4',
'ENSMUSG00000065348' => 'Gm25577',
'ENSMUSG00000088797' => 'Gm22537',
'ENSMUSG00000093544' => 'Gm20613',
'ENSDARG00000056666' => 'sp8b',
'ENSDARG00000077384' => 'dnah11',
'ENSDARG00000093927' => 'si:ch211-180p9.2',
'ENSDARG00000094282' => 'DNAH11 (2 of 2)'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 2 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 3 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 4 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 8 => 'Adrenal',
(int) 17 => 'Bladder',
(int) 20 => 'Brain',
(int) 41 => 'Breast',
(int) 53 => 'Colon',
(int) 62 => 'Heart',
(int) 77 => 'Kidney',
(int) 91 => 'Liver',
(int) 105 => 'Lung',
(int) 115 => 'Muscle',
(int) 133 => 'Ovary',
(int) 148 => 'Placenta',
(int) 161 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 55,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENST00000405810' => array(
'start' => '20827326',
'end' => '20827753',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RPL23P8-001'
),
'ENST00000441309' => array(
'start' => '21220213',
'end' => '21221428',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'ASS1P11-001'
),
'ENST00000447262' => array(
'start' => '20835431',
'end' => '21023148',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01162-001'
),
'ENST00000443431' => array(
'start' => '20843627',
'end' => '20843961',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RPS26P30-001'
),
'ENST00000467147' => array(
'start' => '21215537',
'end' => '21215830',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'RN7SL542P-201'
),
'ENST00000222584' => array(
'start' => '21428034',
'end' => '21514822',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SP4-001'
),
'ENST00000432066' => array(
'start' => '21428043',
'end' => '21477239',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SP4-004'
),
'ENST00000440636' => array(
'start' => '21428195',
'end' => '21428900',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'SP4-003'
),
'ENST00000448246' => array(
'start' => '21428044',
'end' => '21514554',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'SP4-002'
),
'ENST00000328843' => array(
'start' => '21543215',
'end' => '21901568',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DNAH11-201'
),
'ENST00000409508' => array(
'start' => '21543215',
'end' => '21901839',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DNAH11-001'
),
'ENST00000421290' => array(
'start' => '21851563',
'end' => '21862011',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'DNAH11-003'
),
'ENST00000465129' => array(
'start' => '21702710',
'end' => '21703773',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'DNAH11-007'
),
'ENST00000465593' => array(
'start' => '21618194',
'end' => '21636078',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'DNAH11-005'
),
'ENST00000479878' => array(
'start' => '21892625',
'end' => '21901116',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'DNAH11-002'
),
'ENST00000483691' => array(
'start' => '21559715',
'end' => '21561446',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'DNAH11-004'
),
'ENST00000496218' => array(
'start' => '21561091',
'end' => '21570716',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'DNAH11-006'
),
'ENST00000605912' => array(
'start' => '21735640',
'end' => '21744919',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DNAH11-009'
),
'ENST00000607050' => array(
'start' => '21543446',
'end' => '21545149',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'DNAH11-008'
),
'ENST00000607413' => array(
'start' => '21851162',
'end' => '21861970',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'DNAH11-010'
),
'ENST00000620169' => array(
'start' => '21543215',
'end' => '21901321',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DNAH11-202'
),
'ENST00000356195' => array(
'start' => '21900900',
'end' => '21945878',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CDCA7L-006'
),
'ENST00000373934' => array(
'start' => '21901799',
'end' => '21945884',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CDCA7L-010'
),
'ENST00000406877' => array(
'start' => '21900901',
'end' => '21946084',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CDCA7L-001'
),
'ENST00000435031' => array(
'start' => '21908421',
'end' => '21944873',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CDCA7L-002'
),
'ENST00000435717' => array(
'start' => '21902654',
'end' => '21904259',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CDCA7L-008'
),
'ENST00000447180' => array(
'start' => '21908367',
'end' => '21945878',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CDCA7L-007'
),
'ENST00000457951' => array(
'start' => '21908201',
'end' => '21945903',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CDCA7L-009'
),
'ENST00000465490' => array(
'start' => '21904150',
'end' => '21916897',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'CDCA7L-003'
),
'ENST00000488845' => array(
'start' => '21900901',
'end' => '21905709',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'CDCA7L-004'
),
'ENST00000489669' => array(
'start' => '21903759',
'end' => '21905575',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'CDCA7L-005'
),
'ENST00000353977' => array(
'start' => '21381363',
'end' => '21381506',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'RNU1-15P-201'
),
'ENST00000408856' => array(
'start' => '21471058',
'end' => '21471146',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'MIR1183-201'
),
'ENST00000440420' => array(
'start' => '21400920',
'end' => '21401613',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'AC005094.2-001'
),
'ENST00000578020' => array(
'start' => '21422269',
'end' => '21422368',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AC004595.1-201'
),
'ENSMUST00000084806' => array(
'start' => '117877982',
'end' => '118199043',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Dnah11-001'
),
'ENSMUST00000175662' => array(
'start' => '117903214',
'end' => '117915738',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Dnah11-004'
),
'ENSMUST00000176239' => array(
'start' => '117903230',
'end' => '117915964',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Dnah11-003'
),
'ENSMUST00000176756' => array(
'start' => '117877982',
'end' => '118060303',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Dnah11-002'
),
'ENSMUST00000021592' => array(
'start' => '117843515',
'end' => '117878706',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cdca7l-001'
),
'ENSMUST00000176499' => array(
'start' => '117804289',
'end' => '117870047',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Cdca7l-002'
),
'ENSMUST00000176735' => array(
'start' => '117843884',
'end' => '117873757',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cdca7l-004'
),
'ENSMUST00000177339' => array(
'start' => '117843888',
'end' => '117875627',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cdca7l-003'
),
'ENSMUST00000026367' => array(
'start' => '118234933',
'end' => '118301440',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Sp4-201'
),
'ENSMUST00000083414' => array(
'start' => '118504928',
'end' => '118505034',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'Gm25577-201'
),
'ENSMUST00000158172' => array(
'start' => '118753554',
'end' => '118753752',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Gm22537-201'
),
'ENSMUST00000175828' => array(
'start' => '117834007',
'end' => '117834351',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm20613-001'
),
'ENSDART00000079201' => array(
'start' => '21493945',
'end' => '21496078',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'sp8b-001'
),
'ENSDART00000112147' => array(
'start' => '21491401',
'end' => '21496982',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'sp8b-201'
),
'ENSDART00000112894' => array(
'start' => '21493920',
'end' => '21496078',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'sp8b-002'
),
'ENSDART00000139357' => array(
'start' => '21494067',
'end' => '21495157',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'sp8b-004'
),
'ENSDART00000020821' => array(
'start' => '21140318',
'end' => '21330406',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'dnah11-201'
),
'ENSDART00000148294' => array(
'start' => '21263828',
'end' => '21330616',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'dnah11-001'
),
'ENSDART00000135879' => array(
'start' => '21379601',
'end' => '21381439',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'si:ch211-180p9.2-001'
),
'ENSDART00000138744' => array(
'start' => '21138769',
'end' => '21211929',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DNAH11 (2 of 2)-001'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0007P2_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007P2_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007P2_0003' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007P2_0004' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0007P2_0001' => array(
'genes_in_region' => array(
'ENSG00000219451' => array(
[maximum depth reached]
),
'ENSG00000225308' => array(
[maximum depth reached]
),
'ENSG00000232790' => array(
[maximum depth reached]
),
'ENSG00000234839' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Brain',
(int) 3 => 'Breast',
(int) 4 => 'Colon',
(int) 5 => 'Heart',
(int) 6 => 'Kidney',
(int) 7 => 'Liver',
(int) 8 => 'Lung',
(int) 9 => 'Muscle',
(int) 10 => 'Ovary',
(int) 11 => 'Placenta',
(int) 12 => 'Testis',
(int) 13 => 'Adipose',
(int) 14 => 'Adrenal',
(int) 15 => 'Breast',
(int) 16 => 'Colon',
(int) 17 => 'Heart',
(int) 18 => 'Kidney',
(int) 19 => 'Liver',
(int) 20 => 'Muscle',
(int) 21 => 'Ovary',
(int) 22 => 'Testis',
(int) 23 => 'Breast',
(int) 24 => 'Placenta',
(int) 25 => 'Testis',
(int) 26 => 'Placenta',
(int) 27 => 'Testis'
)
),
'CIL_0007P2_0002' => array(
'genes_in_region' => array(
'ENSG00000105866' => array(
[maximum depth reached]
),
'ENSG00000164649' => array(
[maximum depth reached]
),
'ENSG00000221783' => array(
[maximum depth reached]
),
'ENSG00000266862' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Brain',
(int) 3 => 'Breast',
(int) 4 => 'Colon',
(int) 5 => 'Heart',
(int) 6 => 'Kidney',
(int) 7 => 'Liver',
(int) 8 => 'Lung',
(int) 9 => 'Muscle',
(int) 10 => 'Ovary',
(int) 11 => 'Placenta',
(int) 12 => 'Testis',
(int) 13 => 'Adipose',
(int) 14 => 'Adrenal',
(int) 15 => 'Bladder',
(int) 16 => 'Brain',
(int) 17 => 'Kidney',
(int) 18 => 'Liver',
(int) 19 => 'Lung',
(int) 20 => 'Ovary',
(int) 21 => 'Placenta',
(int) 22 => 'Testis',
(int) 23 => 'Ovary',
(int) 24 => 'Brain',
(int) 25 => 'Kidney',
(int) 26 => 'Liver',
(int) 27 => 'Lung',
(int) 28 => 'Muscle',
(int) 29 => 'Ovary',
(int) 30 => 'Ovary',
(int) 31 => 'Placenta',
(int) 32 => 'Testis',
(int) 33 => 'Brain',
(int) 34 => 'Breast',
(int) 35 => 'Colon',
(int) 36 => 'Muscle',
(int) 37 => 'Adipose',
(int) 38 => 'Adrenal',
(int) 39 => 'Brain',
(int) 40 => 'Breast',
(int) 41 => 'Colon',
(int) 42 => 'Heart',
(int) 43 => 'Kidney',
(int) 44 => 'Liver',
(int) 45 => 'Lung',
(int) 46 => 'Muscle',
(int) 47 => 'Ovary',
(int) 48 => 'Placenta',
(int) 49 => 'Testis',
(int) 50 => 'Muscle',
(int) 51 => 'Colon',
(int) 52 => 'Muscle',
(int) 53 => 'Brain',
(int) 54 => 'Breast',
(int) 55 => 'Muscle',
(int) 56 => 'Adrenal',
(int) 57 => 'Brain',
(int) 58 => 'Breast',
(int) 59 => 'Kidney',
(int) 60 => 'Liver',
(int) 61 => 'Muscle',
(int) 62 => 'Ovary',
(int) 63 => 'Placenta',
(int) 64 => 'Ovary',
(int) 65 => 'Testis',
(int) 66 => 'Adipose',
(int) 67 => 'Adrenal',
(int) 68 => 'Brain',
(int) 69 => 'Breast',
(int) 70 => 'Colon',
(int) 71 => 'Heart',
(int) 72 => 'Kidney',
(int) 73 => 'Lung',
(int) 74 => 'Muscle',
(int) 75 => 'Testis'
)
),
'CIL_0007P2_0003' => array(
'genes_in_region' => array(
'ENSMUSG00000018581' => array(
[maximum depth reached]
),
'ENSMUSG00000021175' => array(
[maximum depth reached]
),
'ENSMUSG00000025323' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Liver',
(int) 3 => 'Lung',
(int) 4 => 'Ovary',
(int) 5 => 'Testis',
(int) 6 => 'Brain',
(int) 7 => 'Adrenal',
(int) 8 => 'Brain',
(int) 9 => 'Breast',
(int) 10 => 'Heart',
(int) 11 => 'Liver',
(int) 12 => 'Lung',
(int) 13 => 'Muscle',
(int) 14 => 'Ovary',
(int) 15 => 'Placenta',
(int) 16 => 'Testis',
(int) 17 => 'Adipose',
(int) 18 => 'Bladder',
(int) 19 => 'Brain',
(int) 20 => 'Breast',
(int) 21 => 'Colon',
(int) 22 => 'Heart',
(int) 23 => 'Kidney',
(int) 24 => 'Liver',
(int) 25 => 'Lung',
(int) 26 => 'Muscle',
(int) 27 => 'Ovary',
(int) 28 => 'Placenta',
(int) 29 => 'Testis',
(int) 30 => 'Brain',
(int) 31 => 'Heart',
(int) 32 => 'Liver',
(int) 33 => 'Ovary',
(int) 34 => 'Placenta',
(int) 35 => 'Testis',
(int) 36 => 'Liver',
(int) 37 => 'Muscle',
(int) 38 => 'Placenta',
(int) 39 => 'Adipose',
(int) 40 => 'Adrenal',
(int) 41 => 'Bladder',
(int) 42 => 'Brain',
(int) 43 => 'Breast',
(int) 44 => 'Colon',
(int) 45 => 'Heart',
(int) 46 => 'Kidney',
(int) 47 => 'Liver',
(int) 48 => 'Lung',
(int) 49 => 'Muscle',
(int) 50 => 'Ovary',
(int) 51 => 'Placenta',
(int) 52 => 'Testis'
)
),
'CIL_0007P2_0004' => array(
'genes_in_region' => array(
'ENSDARG00000056666' => array(
[maximum depth reached]
),
'ENSDARG00000077384' => array(
[maximum depth reached]
),
'ENSDARG00000093927' => array(
[maximum depth reached]
),
'ENSDARG00000094282' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Heart',
(int) 1 => 'Muscle',
(int) 2 => 'Brain',
(int) 3 => 'Kidney',
(int) 4 => 'Brain',
(int) 5 => 'Brain',
(int) 6 => 'Brain',
(int) 7 => 'Heart',
(int) 8 => 'Kidney',
(int) 9 => 'Brain',
(int) 10 => 'Heart',
(int) 11 => 'Kidney',
(int) 12 => 'Muscle',
(int) 13 => 'Heart',
(int) 14 => 'Brain',
(int) 15 => 'Heart',
(int) 16 => 'Kidney',
(int) 17 => 'Liver',
(int) 18 => 'Muscle'
)
)
)
$gene_desc_arr = array(
'ENSG00000219451' => 'ribosomal protein L23 pseudogene 8',
'ENSG00000225308' => 'argininosuccinate synthetase 1 pseudogene 11',
'ENSG00000232790' => 'long intergenic non-protein coding RNA 1162',
'ENSG00000234839' => 'ribosomal protein S26 pseudogene 30',
'ENSG00000243633' => 'RNA, 7SL, cytoplasmic 542, pseudogene',
'ENSG00000105866' => 'Sp4 transcription factor',
'ENSG00000105877' => 'dynein, axonemal, heavy chain 11',
'ENSG00000164649' => 'cell division cycle associated 7-like',
'ENSG00000195024' => 'RNA, U1 small nuclear 15, pseudogene',
'ENSG00000221783' => 'microRNA 1183',
'ENSG00000229949' => null,
'ENSG00000266862' => null,
'ENSMUSG00000018581' => 'dynein, axonemal, heavy chain 11',
'ENSMUSG00000021175' => 'cell division cycle associated 7 like',
'ENSMUSG00000025323' => 'trans-acting transcription factor 4',
'ENSMUSG00000065348' => 'predicted gene, 25577',
'ENSMUSG00000088797' => 'predicted gene, 22537',
'ENSMUSG00000093544' => 'predicted gene 20613',
'ENSDARG00000056666' => 'sp8 transcription factor b',
'ENSDARG00000077384' => 'dynein, axonemal, heavy chain 11',
'ENSDARG00000093927' => 'si:ch211-180p9.2',
'ENSDARG00000094282' => 'dynein, axonemal, heavy chain 11'
)
$gene_name_arr = array(
'ENSG00000219451' => 'RPL23P8',
'ENSG00000225308' => 'ASS1P11',
'ENSG00000232790' => 'LINC01162',
'ENSG00000234839' => 'RPS26P30',
'ENSG00000243633' => 'RN7SL542P',
'ENSG00000105866' => 'SP4',
'ENSG00000105877' => 'DNAH11',
'ENSG00000164649' => 'CDCA7L',
'ENSG00000195024' => 'RNU1-15P',
'ENSG00000221783' => 'MIR1183',
'ENSG00000229949' => 'AC005094.2',
'ENSG00000266862' => 'AC004595.1',
'ENSMUSG00000018581' => 'Dnah11',
'ENSMUSG00000021175' => 'Cdca7l',
'ENSMUSG00000025323' => 'Sp4',
'ENSMUSG00000065348' => 'Gm25577',
'ENSMUSG00000088797' => 'Gm22537',
'ENSMUSG00000093544' => 'Gm20613',
'ENSDARG00000056666' => 'sp8b',
'ENSDARG00000077384' => 'dnah11',
'ENSDARG00000093927' => 'si:ch211-180p9.2',
'ENSDARG00000094282' => 'DNAH11 (2 of 2)'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007P2_0001',
'tax_id' => '9606',
'chromosome' => '7',
'seq_start' => '20790061',
'seq_end' => '21278350',
'region_length' => '488289',
'region_type' => 'UCNEbase',
'el_id' => 'SP8'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007P2_0002',
'tax_id' => '9606',
'chromosome' => '7',
'seq_start' => '21278351',
'seq_end' => '22052549',
'region_length' => '774198',
'region_type' => 'UCNEbase',
'el_id' => 'SP8'
)
),
(int) 2 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007P2_0003',
'tax_id' => '10090',
'chromosome' => '12',
'seq_start' => '117806045',
'seq_end' => '118844257',
'region_length' => '1038212',
'region_type' => 'UCNEbase',
'el_id' => 'SP8'
)
),
(int) 3 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007P2_0004',
'tax_id' => '7955',
'chromosome' => '16',
'seq_start' => '21155703',
'seq_end' => '21492450',
'region_length' => '336747',
'region_type' => 'UCNEbase',
'el_id' => 'SP8'
)
),
(int) 4 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007P2_0005',
'tax_id' => '7955',
'chromosome' => '19',
'seq_start' => '2566913',
'seq_end' => '2573351',
'region_length' => '6438',
'region_type' => 'UCNEbase',
'el_id' => 'SP8'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 8 => 'Adrenal',
(int) 17 => 'Bladder',
(int) 20 => 'Brain',
(int) 41 => 'Breast',
(int) 53 => 'Colon',
(int) 62 => 'Heart',
(int) 77 => 'Kidney',
(int) 91 => 'Liver',
(int) 105 => 'Lung',
(int) 115 => 'Muscle',
(int) 133 => 'Ovary',
(int) 148 => 'Placenta',
(int) 161 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 55
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000405810' => array(
'start' => '20827326',
'end' => '20827753',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RPL23P8-001'
),
'ENST00000441309' => array(
'start' => '21220213',
'end' => '21221428',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'ASS1P11-001'
),
'ENST00000447262' => array(
'start' => '20835431',
'end' => '21023148',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01162-001'
),
'ENST00000443431' => array(
'start' => '20843627',
'end' => '20843961',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RPS26P30-001'
),
'ENST00000467147' => array(
'start' => '21215537',
'end' => '21215830',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'RN7SL542P-201'
),
'ENST00000222584' => array(
'start' => '21428034',
'end' => '21514822',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SP4-001'
),
'ENST00000432066' => array(
'start' => '21428043',
'end' => '21477239',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SP4-004'
),
'ENST00000440636' => array(
'start' => '21428195',
'end' => '21428900',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'SP4-003'
),
'ENST00000448246' => array(
'start' => '21428044',
'end' => '21514554',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'SP4-002'
),
'ENST00000328843' => array(
'start' => '21543215',
'end' => '21901568',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DNAH11-201'
),
'ENST00000409508' => array(
'start' => '21543215',
'end' => '21901839',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DNAH11-001'
),
'ENST00000421290' => array(
'start' => '21851563',
'end' => '21862011',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'DNAH11-003'
),
'ENST00000465129' => array(
'start' => '21702710',
'end' => '21703773',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'DNAH11-007'
),
'ENST00000465593' => array(
'start' => '21618194',
'end' => '21636078',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'DNAH11-005'
),
'ENST00000479878' => array(
'start' => '21892625',
'end' => '21901116',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'DNAH11-002'
),
'ENST00000483691' => array(
'start' => '21559715',
'end' => '21561446',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'DNAH11-004'
),
'ENST00000496218' => array(
'start' => '21561091',
'end' => '21570716',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'DNAH11-006'
),
'ENST00000605912' => array(
'start' => '21735640',
'end' => '21744919',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DNAH11-009'
),
'ENST00000607050' => array(
'start' => '21543446',
'end' => '21545149',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'DNAH11-008'
),
'ENST00000607413' => array(
'start' => '21851162',
'end' => '21861970',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'DNAH11-010'
),
'ENST00000620169' => array(
'start' => '21543215',
'end' => '21901321',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DNAH11-202'
),
'ENST00000356195' => array(
'start' => '21900900',
'end' => '21945878',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CDCA7L-006'
),
'ENST00000373934' => array(
'start' => '21901799',
'end' => '21945884',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CDCA7L-010'
),
'ENST00000406877' => array(
'start' => '21900901',
'end' => '21946084',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CDCA7L-001'
),
'ENST00000435031' => array(
'start' => '21908421',
'end' => '21944873',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CDCA7L-002'
),
'ENST00000435717' => array(
'start' => '21902654',
'end' => '21904259',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CDCA7L-008'
),
'ENST00000447180' => array(
'start' => '21908367',
'end' => '21945878',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CDCA7L-007'
),
'ENST00000457951' => array(
'start' => '21908201',
'end' => '21945903',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CDCA7L-009'
),
'ENST00000465490' => array(
'start' => '21904150',
'end' => '21916897',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'CDCA7L-003'
),
'ENST00000488845' => array(
'start' => '21900901',
'end' => '21905709',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'CDCA7L-004'
),
'ENST00000489669' => array(
'start' => '21903759',
'end' => '21905575',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'CDCA7L-005'
),
'ENST00000353977' => array(
'start' => '21381363',
'end' => '21381506',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'RNU1-15P-201'
),
'ENST00000408856' => array(
'start' => '21471058',
'end' => '21471146',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'MIR1183-201'
),
'ENST00000440420' => array(
'start' => '21400920',
'end' => '21401613',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'AC005094.2-001'
),
'ENST00000578020' => array(
'start' => '21422269',
'end' => '21422368',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AC004595.1-201'
),
'ENSMUST00000084806' => array(
'start' => '117877982',
'end' => '118199043',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Dnah11-001'
),
'ENSMUST00000175662' => array(
'start' => '117903214',
'end' => '117915738',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Dnah11-004'
),
'ENSMUST00000176239' => array(
'start' => '117903230',
'end' => '117915964',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Dnah11-003'
),
'ENSMUST00000176756' => array(
'start' => '117877982',
'end' => '118060303',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Dnah11-002'
),
'ENSMUST00000021592' => array(
'start' => '117843515',
'end' => '117878706',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cdca7l-001'
),
'ENSMUST00000176499' => array(
'start' => '117804289',
'end' => '117870047',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Cdca7l-002'
),
'ENSMUST00000176735' => array(
'start' => '117843884',
'end' => '117873757',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cdca7l-004'
),
'ENSMUST00000177339' => array(
'start' => '117843888',
'end' => '117875627',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cdca7l-003'
),
'ENSMUST00000026367' => array(
'start' => '118234933',
'end' => '118301440',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Sp4-201'
),
'ENSMUST00000083414' => array(
'start' => '118504928',
'end' => '118505034',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'Gm25577-201'
),
'ENSMUST00000158172' => array(
'start' => '118753554',
'end' => '118753752',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Gm22537-201'
),
'ENSMUST00000175828' => array(
'start' => '117834007',
'end' => '117834351',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm20613-001'
),
'ENSDART00000079201' => array(
'start' => '21493945',
'end' => '21496078',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'sp8b-001'
),
'ENSDART00000112147' => array(
'start' => '21491401',
'end' => '21496982',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'sp8b-201'
),
'ENSDART00000112894' => array(
'start' => '21493920',
'end' => '21496078',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'sp8b-002'
),
'ENSDART00000139357' => array(
'start' => '21494067',
'end' => '21495157',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'sp8b-004'
),
'ENSDART00000020821' => array(
'start' => '21140318',
'end' => '21330406',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'dnah11-201'
),
'ENSDART00000148294' => array(
'start' => '21263828',
'end' => '21330616',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'dnah11-001'
),
'ENSDART00000135879' => array(
'start' => '21379601',
'end' => '21381439',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'si:ch211-180p9.2-001'
),
'ENSDART00000138744' => array(
'start' => '21138769',
'end' => '21211929',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DNAH11 (2 of 2)-001'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0007P2_0001' => array(
'genes_in_region' => array(
'ENSG00000219451' => array(
[maximum depth reached]
),
'ENSG00000225308' => array(
[maximum depth reached]
),
'ENSG00000232790' => array(
[maximum depth reached]
),
'ENSG00000234839' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Brain',
(int) 3 => 'Breast',
(int) 4 => 'Colon',
(int) 5 => 'Heart',
(int) 6 => 'Kidney',
(int) 7 => 'Liver',
(int) 8 => 'Lung',
(int) 9 => 'Muscle',
(int) 10 => 'Ovary',
(int) 11 => 'Placenta',
(int) 12 => 'Testis',
(int) 13 => 'Adipose',
(int) 14 => 'Adrenal',
(int) 15 => 'Breast',
(int) 16 => 'Colon',
(int) 17 => 'Heart',
(int) 18 => 'Kidney',
(int) 19 => 'Liver',
(int) 20 => 'Muscle',
(int) 21 => 'Ovary',
(int) 22 => 'Testis',
(int) 23 => 'Breast',
(int) 24 => 'Placenta',
(int) 25 => 'Testis',
(int) 26 => 'Placenta',
(int) 27 => 'Testis'
)
),
'CIL_0007P2_0002' => array(
'genes_in_region' => array(
'ENSG00000105866' => array(
[maximum depth reached]
),
'ENSG00000164649' => array(
[maximum depth reached]
),
'ENSG00000221783' => array(
[maximum depth reached]
),
'ENSG00000266862' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Brain',
(int) 3 => 'Breast',
(int) 4 => 'Colon',
(int) 5 => 'Heart',
(int) 6 => 'Kidney',
(int) 7 => 'Liver',
(int) 8 => 'Lung',
(int) 9 => 'Muscle',
(int) 10 => 'Ovary',
(int) 11 => 'Placenta',
(int) 12 => 'Testis',
(int) 13 => 'Adipose',
(int) 14 => 'Adrenal',
(int) 15 => 'Bladder',
(int) 16 => 'Brain',
(int) 17 => 'Kidney',
(int) 18 => 'Liver',
(int) 19 => 'Lung',
(int) 20 => 'Ovary',
(int) 21 => 'Placenta',
(int) 22 => 'Testis',
(int) 23 => 'Ovary',
(int) 24 => 'Brain',
(int) 25 => 'Kidney',
(int) 26 => 'Liver',
(int) 27 => 'Lung',
(int) 28 => 'Muscle',
(int) 29 => 'Ovary',
(int) 30 => 'Ovary',
(int) 31 => 'Placenta',
(int) 32 => 'Testis',
(int) 33 => 'Brain',
(int) 34 => 'Breast',
(int) 35 => 'Colon',
(int) 36 => 'Muscle',
(int) 37 => 'Adipose',
(int) 38 => 'Adrenal',
(int) 39 => 'Brain',
(int) 40 => 'Breast',
(int) 41 => 'Colon',
(int) 42 => 'Heart',
(int) 43 => 'Kidney',
(int) 44 => 'Liver',
(int) 45 => 'Lung',
(int) 46 => 'Muscle',
(int) 47 => 'Ovary',
(int) 48 => 'Placenta',
(int) 49 => 'Testis',
(int) 50 => 'Muscle',
(int) 51 => 'Colon',
(int) 52 => 'Muscle',
(int) 53 => 'Brain',
(int) 54 => 'Breast',
(int) 55 => 'Muscle',
(int) 56 => 'Adrenal',
(int) 57 => 'Brain',
(int) 58 => 'Breast',
(int) 59 => 'Kidney',
(int) 60 => 'Liver',
(int) 61 => 'Muscle',
(int) 62 => 'Ovary',
(int) 63 => 'Placenta',
(int) 64 => 'Ovary',
(int) 65 => 'Testis',
(int) 66 => 'Adipose',
(int) 67 => 'Adrenal',
(int) 68 => 'Brain',
(int) 69 => 'Breast',
(int) 70 => 'Colon',
(int) 71 => 'Heart',
(int) 72 => 'Kidney',
(int) 73 => 'Lung',
(int) 74 => 'Muscle',
(int) 75 => 'Testis'
)
),
'CIL_0007P2_0003' => array(
'genes_in_region' => array(
'ENSMUSG00000018581' => array(
[maximum depth reached]
),
'ENSMUSG00000021175' => array(
[maximum depth reached]
),
'ENSMUSG00000025323' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Liver',
(int) 3 => 'Lung',
(int) 4 => 'Ovary',
(int) 5 => 'Testis',
(int) 6 => 'Brain',
(int) 7 => 'Adrenal',
(int) 8 => 'Brain',
(int) 9 => 'Breast',
(int) 10 => 'Heart',
(int) 11 => 'Liver',
(int) 12 => 'Lung',
(int) 13 => 'Muscle',
(int) 14 => 'Ovary',
(int) 15 => 'Placenta',
(int) 16 => 'Testis',
(int) 17 => 'Adipose',
(int) 18 => 'Bladder',
(int) 19 => 'Brain',
(int) 20 => 'Breast',
(int) 21 => 'Colon',
(int) 22 => 'Heart',
(int) 23 => 'Kidney',
(int) 24 => 'Liver',
(int) 25 => 'Lung',
(int) 26 => 'Muscle',
(int) 27 => 'Ovary',
(int) 28 => 'Placenta',
(int) 29 => 'Testis',
(int) 30 => 'Brain',
(int) 31 => 'Heart',
(int) 32 => 'Liver',
(int) 33 => 'Ovary',
(int) 34 => 'Placenta',
(int) 35 => 'Testis',
(int) 36 => 'Liver',
(int) 37 => 'Muscle',
(int) 38 => 'Placenta',
(int) 39 => 'Adipose',
(int) 40 => 'Adrenal',
(int) 41 => 'Bladder',
(int) 42 => 'Brain',
(int) 43 => 'Breast',
(int) 44 => 'Colon',
(int) 45 => 'Heart',
(int) 46 => 'Kidney',
(int) 47 => 'Liver',
(int) 48 => 'Lung',
(int) 49 => 'Muscle',
(int) 50 => 'Ovary',
(int) 51 => 'Placenta',
(int) 52 => 'Testis'
)
),
'CIL_0007P2_0004' => array(
'genes_in_region' => array(
'ENSDARG00000056666' => array(
[maximum depth reached]
),
'ENSDARG00000077384' => array(
[maximum depth reached]
),
'ENSDARG00000093927' => array(
[maximum depth reached]
),
'ENSDARG00000094282' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Heart',
(int) 1 => 'Muscle',
(int) 2 => 'Brain',
(int) 3 => 'Kidney',
(int) 4 => 'Brain',
(int) 5 => 'Brain',
(int) 6 => 'Brain',
(int) 7 => 'Heart',
(int) 8 => 'Kidney',
(int) 9 => 'Brain',
(int) 10 => 'Heart',
(int) 11 => 'Kidney',
(int) 12 => 'Muscle',
(int) 13 => 'Heart',
(int) 14 => 'Brain',
(int) 15 => 'Heart',
(int) 16 => 'Kidney',
(int) 17 => 'Liver',
(int) 18 => 'Muscle'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0007P2_0005',
'tax_id' => '7955',
'chromosome' => '19',
'seq_start' => '2566913',
'seq_end' => '2573351',
'region_length' => '6438',
'region_type' => 'UCNEbase',
'el_id' => 'SP8'
)
)
$gene_el = array(
'ENSDART00000138744' => array(
'Brain' => array(
'average_FPKM' => '0.151',
'stddev_FPKM' => '0.13'
),
'Heart' => array(
'average_FPKM' => '0.083',
'stddev_FPKM' => '0.02'
),
'Kidney' => array(
'average_FPKM' => '0.342',
'stddev_FPKM' => '0.06'
),
'Liver' => array(
'average_FPKM' => '0.013',
'stddev_FPKM' => '0.00'
),
'Muscle' => array(
'average_FPKM' => '0.089',
'stddev_FPKM' => '0.00'
)
)
)
$gene_key = 'ENSDARG00000094282'
$is_first = false
$tran_el = array(
'Brain' => array(
'average_FPKM' => '0.151',
'stddev_FPKM' => '0.13'
),
'Heart' => array(
'average_FPKM' => '0.083',
'stddev_FPKM' => '0.02'
),
'Kidney' => array(
'average_FPKM' => '0.342',
'stddev_FPKM' => '0.06'
),
'Liver' => array(
'average_FPKM' => '0.013',
'stddev_FPKM' => '0.00'
),
'Muscle' => array(
'average_FPKM' => '0.089',
'stddev_FPKM' => '0.00'
)
)
$tran_key = 'ENSDART00000138744'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
(RPL23P8)