C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000106003 LFNG 9606 + 7:2512529-2529177 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000222725 LFNG-001 2519842-2528429 protein_coding
  ENST00000338732 LFNG-201 2518554-2528427 protein_coding
  ENST00000359574 LFNG-002 2519862-2529177 protein_coding
  ENST00000402045 LFNG-004 2517863-2528429 protein_coding
  ENST00000402506 LFNG-003 2512529-2528427 protein_coding
  ENST00000493850 LFNG-005 2523593-2526871 retained_intron
  ENST00000614382 LFNG-202 2524648-2528427 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000222725ENST00000338732ENST00000359574ENST00000493850ENST00000614382
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000222725 1.177±0.00 N/A N/A 1.681±0.00 2.571±2.07 1.908±0.00 1.702±0.00 1.564±0.00 1.102±0.45 3.337±2.85 0.518±0.00 4.329±3.38 2.983±1.69 0.615±0.00
ENST00000338732 N/A N/A N/A N/A N/A 1.945±0.00 N/A 0.731±0.00 N/A N/A 0.131±0.00 7.420±0.00 7.148±1.43 N/A
ENST00000359574 N/A N/A 0.373±0.00 N/A N/A N/A 0.162±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000493850 N/A N/A N/A N/A N/A N/A 0.281±0.00 N/A N/A N/A 0.424±0.00 N/A N/A N/A
ENST00000614382 0.502±0.00 7.702±0.00 N/A 1.975±0.00 10.433±0.00 1.982±0.00 N/A 1.373±0.00 0.184±0.00 N/A 0.145±0.04 1.158±0.00 N/A 2.866±0.99

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007RS CIL_0007RS_0001 VISTA 7:2311652-2915186
CIL_00027L CIL_00027L_0002 CGP 7:2474844-2529177

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001541 IEA ovarian follicle development
GO:0001756 IEA somitogenesis
GO:0003674 ND molecular_function
GO:0005576 NAS extracellular region
GO:0007143 IEA female meiotic division
GO:0007219 TAS Notch signaling pathway
GO:0007386 IEA compartment pattern specification
GO:0007389 IEA pattern specification process
GO:0008152 IEA metabolic process
GO:0008593 ISS regulation of Notch signaling pathway
GO:0009887 NAS organ morphogenesis
GO:0014807 IMP regulation of somitogenesis
GO:0016020 IEA membrane
GO:0016757 IEA transferase activity, transferring glycosyl groups
GO:0030173 IEA integral component of Golgi membrane
GO:0031982 IDA vesicle
GO:0032092 IEA positive regulation of protein binding
GO:0033829 ISS:IEA O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase activity
GO:0045747 IEA positive regulation of Notch signaling pathway
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000037879 lfng lunatic fringe homolog protein_coding Danio_rerio
ENSMUSG00000029570 Lfng LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase protein_coding Mus_musculus

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